CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052008_P003	Maize	cytosol	86.36	85.9
Os02t0803300-01	Rice	cytosol	81.45	78.73
KXG19435	Sorghum	cytosol, mitochondrion	70.55	68.79
TraesCS6A01G370500.1	Wheat	cytosol	71.82	67.87
TraesCS6D01G354100.2	Wheat	cytosol	72.55	67.4
HORVU6Hr1G087330.4	Barley	cytosol	71.27	67.35
TraesCS6B01G407500.2	Wheat	cytosol	72.18	67.17
GSMUA_Achr6P03060_001	Banana	cytosol	65.09	65.45
GSMUA_Achr5P23570_001	Banana	cytosol	63.82	64.4
VIT_11s0016g05900.t01	Wine grape	cytosol	58.73	63.58
CDY41768	Canola	cytosol, mitochondrion	44.73	61.81
Solyc07g007820.2.1	Tomato	cytosol	63.09	61.63
KRH20163	Soybean	cytosol	60.55	60.99
CDY71126	Canola	cytosol, mitochondrion	47.09	60.8
KRH03643	Soybean	mitochondrion	60.55	60.77
PGSC0003DMT400017184	Potato	cytosol	45.82	58.47
AT5G35200.2	Thale cress	cytosol	56.55	57.17
CDY12401	Canola	cytosol, mitochondrion	55.82	56.85
Bra038937.1-P	Field mustard	mitochondrion	56.36	56.36
EES19899	Sorghum	cytosol, mitochondrion, plastid	47.27	46.1
EES01312	Sorghum	cytosol	45.45	44.41
EES06356	Sorghum	cytosol	45.27	43.68
KXG20765	Sorghum	mitochondrion	45.09	43.66
KXG20534	Sorghum	cytosol, mitochondrion	45.82	43.45
EER92480	Sorghum	cytosol, mitochondrion, plastid	30.0	25.58
EES18258	Sorghum	cytosol	28.36	25.04
EES18894	Sorghum	cytosol	26.0	22.95
KXG33814	Sorghum	cytosol, mitochondrion	23.45	22.67
EER96828	Sorghum	mitochondrion	14.36	19.65
EES13983	Sorghum	mitochondrion	14.0	19.15
EES08262	Sorghum	mitochondrion, plastid	11.82	14.87

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	UniProt:A0A194YSS6	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
ncoils:Coil	InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276
GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	EnsemblPlants:KXG31293	ProteinID:KXG31293
ProteinID:KXG31293.1	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF29	SMART:SM00273
EnsemblPlantsGene:SORBI_3004G334400	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0003C6E73F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:66679668..66684382

Molecular Weight (calculated)

60997.4 Da

IEP (calculated)

5.242

GRAVY (calculated)

-0.373

Length

550 amino acids

Sequence
(BLAST)

001: MAGGGTGIRK YMGALKDTTT VSIAKVNSDY KELDIAIVKA TNHVENPTKE KYIREIFYHL SPGRPRADVA YCIRTLGRRL SKTRNWAVAL KTLIVIHRAL
101: LEVGPAFREE LISYGRSSSH MLYLSYFKDD SSAEAWDYSA WVRNYALYLE EKLESFRVLN YDVEKDPSKI QDLDTSGLLN QLPALQQLLF RLLGCQPQGA
201: SSYNIIIQHA LSMVALESVR IQTAINDGIL NLVDKFFEMK RDDAIRALDM YKRAIEQAEQ LSEFYEVCKS IHIGRGERFL KIEQPPASFL ATMEEYVSNA
301: PLASTVQRNQ AVLAIEYNKK SEVEEPSTLP PPPPPAQEPE PEPEPVKQVP PVAEPTDLLG INESTPDTSE IDQKNAAALA IVPQDNALKA APTSTESVAT
401: SWELALVTAP SSNGNAVTSS KMAGGLDLLT LDSLYNEAHQ RAQQNASYNP WETNPASGPV IQQPMYDPFY ASNPMAAARS VQMAAMEQQQ HAFMLQQQQQ
501: QQQQMMMMAQ QQQQASSNPF ANLYMHAGAH PYAAGVQLHA GNAYSGTGMM

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.