CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015430_P001	Maize	cytosol	91.93	90.81
Os02t0175700-01	Rice	plasma membrane	75.26	73.58
TraesCS6D01G143700.1	Wheat	cytosol	73.68	71.55
Solyc12g017440.1.1	Tomato	cytosol	36.84	70.23
TraesCS6B01G181800.1	Wheat	cytosol	71.05	70.19
TraesCS6A01G154100.1	Wheat	cytosol	71.58	69.62
CDY42239	Canola	cytosol	40.88	69.14
KXG20534	Sorghum	cytosol, mitochondrion	70.35	69.14
HORVU6Hr1G030980.1	Barley	cytosol	71.58	65.91
GSMUA_Achr7P04960_001	Banana	cytosol	62.81	65.09
GSMUA_Achr1P15690_001	Banana	cytosol	63.33	64.58
GSMUA_Achr4P20660_001	Banana	cytosol	62.11	63.55
PGSC0003DMT400036570	Potato	cytosol	59.12	58.81
KRH02791	Soybean	cytosol	58.95	58.54
VIT_11s0103g00620.t01	Wine grape	cytosol	60.53	58.38
CDY47927	Canola	cytosol	51.58	58.22
Solyc02g043810.2.1	Tomato	cytosol	58.95	58.13
CDY52732	Canola	cytosol	59.47	57.95
Bra002750.1-P	Field mustard	cytosol	60.18	57.84
EES19899	Sorghum	cytosol, mitochondrion, plastid	57.19	57.8
CDY38276	Canola	cytosol	59.82	57.6
KRH19094	Soybean	cytosol	57.89	57.49
Bra020460.1-P	Field mustard	cytosol	59.3	56.9
AT5G57200.1	Thale cress	cytosol	58.77	56.68
KRH37330	Soybean	cytosol	58.77	56.21
KRH12315	Soybean	cytosol	58.42	55.87
EES01312	Sorghum	cytosol	54.21	54.88
KXG20765	Sorghum	mitochondrion	54.39	54.58
CDX89382	Canola	cytosol	57.19	54.24
Bra013934.1-P	Field mustard	cytosol	57.02	54.08
CDX94400	Canola	cytosol	56.49	54.03
AT4G25940.1	Thale cress	cytosol	56.84	53.91
KXG19435	Sorghum	cytosol, mitochondrion	45.79	46.28
KXG31293	Sorghum	cytosol	43.68	45.27
Solyc12g017430.1.1	Tomato	nucleus	14.74	39.62
PGSC0003DMT400025029	Potato	nucleus	18.07	36.27
EER92480	Sorghum	cytosol, mitochondrion, plastid	31.05	27.44
EES18258	Sorghum	cytosol	29.12	26.65
EES18894	Sorghum	cytosol	27.37	25.04
KXG33814	Sorghum	cytosol, mitochondrion	24.21	24.25
EES13983	Sorghum	mitochondrion	15.26	21.64
EER96828	Sorghum	mitochondrion	14.74	20.9
EES08262	Sorghum	mitochondrion, plastid	15.26	19.91

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	EntrezGene:8077199	InterPro:ANTH_dom	UniProt:C5XW75
InterPro:Clathrin_AP_dom2	EnsemblPlants:EES06356	ProteinID:EES06356	ProteinID:EES06356.1	InterPro:ENTH	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809
InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF21	SMART:SM00273
EnsemblPlantsGene:SORBI_3004G060400	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0001A85ADB	RefSeq:XP_002453380.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:4826608..4830172

Molecular Weight (calculated)

63983.4 Da

IEP (calculated)

4.763

GRAVY (calculated)

-0.428

Length

570 amino acids

Sequence
(BLAST)

001: MGSWRKAYGA LKDSTTVGLA KVNSEFKELD IAIVKATNHV ECPPKERHVR KILLATSANR PRADVSYCMY ALSRRLSKTK NWIVALKTLI VVHRLLREGD
101: PTFKEEFLAY SSRGNILYIA NFKDDSSQSA WDCSAWVRTY AFFLEERLEC FRVLKYDIET ERLVRYPQTS SKAHSKTRNL PSPELLEQLP ALQQLLFRVV
201: GVQPEGAACS NYLIQYALAL VLKESFKIYC SINDGIINLV DMFFDMPKYE AINALAIYKR AGLQAENLAE FYDFCKQLEL ARTFQFPTLR QPPASFLATM
301: EEYIREAPRP SIKSEESEEP KLLTYDQEAP EEPENPVEEE KEEPEQEPEP QPVPDPEPHP QQTTGDLLNL DAEVNPSVAE LEESNALALA IIAPGDCKAS
401: VSQSMFDVNS SGWELALVTA PSTHTSQAVQ TNLAGGFDKL LLDSLYEDGA RRQQIASVTY TGSLGAANPF SVNGNDPFAM SSSFAPPANV QLALMTQNQQ
501: QYYQAQQYFQ PQQQYFQQHQ QTSAMPTQNM YHHQYQYSVP PSGAPNPFGD PFSDLAPMGA PGKQSNSVFL

Best Arabidopsis Sequence Match ( AT5G57200.1 )
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Arabidopsis Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.