CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12315	Soybean	cytosol	91.28	91.28
CDY42239	Canola	cytosol	44.46	78.64
KRH02791	Soybean	cytosol	73.49	76.31
KRH19094	Soybean	cytosol	71.98	74.74
Os06t0661400-01	Rice	cytosol	29.87	71.2
VIT_11s0103g00620.t01	Wine grape	cytosol	69.3	69.88
AT5G57200.1	Thale cress	cytosol	66.78	67.34
CDY52732	Canola	cytosol	65.6	66.84
CDY38276	Canola	cytosol	66.11	66.55
Solyc02g043810.2.1	Tomato	cytosol	64.43	66.44
Bra002750.1-P	Field mustard	cytosol	65.77	66.1
PGSC0003DMT400036570	Potato	cytosol	63.42	65.97
CDY47927	Canola	cytosol	55.7	65.74
Bra020460.1-P	Field mustard	cytosol	65.44	65.66
GSMUA_Achr7P04960_001	Banana	cytosol	60.57	65.64
AT4G25940.1	Thale cress	cytosol	65.6	65.06
GSMUA_Achr1P15690_001	Banana	cytosol	59.73	63.69
CDX94400	Canola	cytosol	63.59	63.59
Bra013934.1-P	Field mustard	cytosol	63.93	63.39
GSMUA_Achr4P20660_001	Banana	cytosol	59.23	63.38
CDX89382	Canola	cytosol	63.76	63.23
Zm00001d036672_P005	Maize	cytosol	57.05	59.13
KXG20534	Sorghum	cytosol, mitochondrion	57.38	58.97
EES06356	Sorghum	cytosol	56.21	58.77
GSMUA_Achr3P05590_001	Banana	cytosol	53.69	58.61
Os02t0175700-01	Rice	plasma membrane	56.88	58.15
KRH42533	Soybean	cytosol	54.87	57.57
HORVU7Hr1G109970.5	Barley	cytosol	55.2	57.52
KRH58627	Soybean	nucleus	54.87	57.47
KXG20765	Sorghum	mitochondrion	54.53	57.22
Zm00001d015430_P001	Maize	cytosol	55.2	57.02
TraesCS7B01G393800.2	Wheat	cytosol	54.53	57.02
TraesCS7A01G490500.2	Wheat	cytosol	54.7	56.79
TraesCS7D01G476900.2	Wheat	cytosol	55.03	56.65
TraesCS6B01G181800.1	Wheat	cytosol	54.53	56.33
TraesCS6D01G143700.1	Wheat	cytosol	54.87	55.71
KRH38239	Soybean	cytosol	51.01	54.87
TraesCS6A01G154100.1	Wheat	cytosol	53.86	54.78
Os06t0699800-00	Rice	cytosol	40.1	54.44
TraesCS7B01G430700.2	Wheat	cytosol	12.92	53.85
KRH03643	Soybean	mitochondrion	49.33	53.65
TraesCS7D01G414100.1	Wheat	mitochondrion	50.84	53.35
KRH20163	Soybean	cytosol	48.83	53.3
TraesCS7A01G421900.1	Wheat	mitochondrion	50.84	53.16
TraesCS7B01G322300.1	Wheat	mitochondrion	50.34	53.1
HORVU6Hr1G030980.1	Barley	cytosol	54.36	52.34
HORVU7Hr1G097510.7	Barley	mitochondrion	43.79	51.08
KRH05593	Soybean	cytosol	5.37	37.21
KRH54979	Soybean	cytosol	30.54	35.97
KRH10492	Soybean	cytosol, mitochondrion	29.7	29.7
KRH43936	Soybean	cytosol, mitochondrion	29.19	29.34
KRH58332	Soybean	mitochondrion	28.19	28.72
KRH20132	Soybean	cytosol	28.69	27.94
KRH41749	Soybean	cytosol	13.26	27.92
KRH52429	Soybean	endoplasmic reticulum	29.7	27.61
KRH61760	Soybean	mitochondrion	29.7	27.15
KRH09259	Soybean	cytosol, nucleus, peroxisome	16.95	23.49
KRH60451	Soybean	mitochondrion	17.45	23.48
KRH38757	Soybean	cytosol, nucleus, peroxisome	16.61	22.81
KRH58584	Soybean	mitochondrion	14.93	22.31
KRH42490	Soybean	cytosol	15.1	22.28
KRG89239	Soybean	cytosol, mitochondrion	13.59	21.09
KRH49763	Soybean	mitochondrion	13.26	20.31
KRH17907	Soybean	cytosol	20.64	16.85

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100783084	MapMan:22.1.6.2	EMBL:ACUP02005437	InterPro:ANTH_dom
InterPro:Clathrin_AP_dom2	ncoils:Coil	InterPro:ENTH	InterPro:ENTH_VHS	EnsemblPlantsGene:GLYMA_09G059500	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043
GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	UniProt:I1L1D8	InterPro:IPR008942	InterPro:IPR013809
InterPro:IPR014712	EnsemblPlants:KRH37330	ProteinID:KRH37330	ProteinID:KRH37330.1	PFAM:PF07651	PFscan:PS50942
PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI000294FAD5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:5496777..5502980

Molecular Weight (calculated)

68006.9 Da

IEP (calculated)

5.288

GRAVY (calculated)

-0.687

Length

596 amino acids

Sequence
(BLAST)

001: MGTFQSFRKA YGALKDSTKV GLAKVNSEYK ELDIAIVKAT NHVEYPPKER HVRKIFYATS AHQPRADVAY CIHKLSKRLS KTQSWIVAIK TLIVIHRTLR
101: EGDPTFREEI LNYSRRGHIL HISNFKDDSS PLAWDCSAWV RVYALFLEER LECFRVLKYD IESERLTKAS PAVNKAHSRT RLLDSNDLLE QLPALQQLLY
201: RLIGCQPEGC AYRNHLVQYA LALVLKESFK IYCALNDGII NLVDMFFDMT RHDAVKALNI YKRAGQQAEN LADFYDYCKG LDLARNFQFP TLRQPPPSFL
301: ATMEEYIKEA PQTGHVNKRL EYQENDESSK EESESNESAE PQANEEQAEE VNGEESVEEE EEKPKQEEEA ESPPFISTDD GIDDLLGLNE INPKVMELEE
401: SNAMALAIVP SGGNNPNNLA LSNIDGTIGW ELSLVTAPSN HSSQAPDRRM AGGFDKLLLD SLYEDENARR QLQLQNAGYG HGGTMDIHNN PFDHYNQHDP
501: FAMSNNIAPP PSVQMALMSQ QQQQQQMVFQ QQQMMYQQPQ QHNNNMMMVP HQQQQPYNQF PHQMQNSGSH NPFGDPLPVP NYNHSSMPQR GNYNLI

Best Arabidopsis Sequence Match ( AT5G57200.1 )
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Arabidopsis Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.