CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42533	Soybean	cytosol	96.66	96.83
KRH38239	Soybean	cytosol	81.2	83.39
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	78.73	79.01
Solyc04g007860.2.1	Tomato	cytosol, plastid	76.63	77.44
PGSC0003DMT400075923	Potato	cytosol	76.45	77.26
CDY17660	Canola	cytosol	74.87	74.61
Bra024871.1-P	Field mustard	cytosol	74.52	74.26
CDY36239	Canola	cytosol	73.99	73.73
AT2G01600.1	Thale cress	cytosol, mitochondrion	73.64	73.38
CDY17459	Canola	cytosol	72.23	72.11
CDY09433	Canola	cytosol, mitochondrion	72.94	71.92
Bra017439.1-P	Field mustard	cytosol	71.88	71.63
CDY04095	Canola	cytosol	71.88	71.63
GSMUA_Achr9P21890_001	Banana	cytosol	70.47	71.61
CDY48813	Canola	cytosol	73.29	71.53
GSMUA_Achr4P13420_001	Banana	cytosol	66.26	70.6
EES19899	Sorghum	cytosol, mitochondrion, plastid	69.24	69.86
Zm00001d038892_P001	Maize	mitochondrion	68.89	69.63
Os05t0549000-01	Rice	plasma membrane	69.24	69.49
TraesCS1D01G375800.1	Wheat	cytosol, mitochondrion, plastid	67.66	68.14
TraesCS1A01G369700.1	Wheat	cytosol, mitochondrion, plastid	67.49	67.96
TraesCS1B01G388800.1	Wheat	cytosol, mitochondrion, plastid	67.14	67.73
Os01t0694900-01	Rice	cytosol	67.31	67.43
EES01312	Sorghum	cytosol	65.55	66.25
TraesCS3A01G258900.1	Wheat	cytosol	64.5	65.65
TraesCS3B01G292000.2	Wheat	cytosol, mitochondrion, plastid	64.5	65.3
TraesCS3D01G259000.2	Wheat	cytosol	64.5	65.19
Zm00001d009452_P007	Maize	cytosol, mitochondrion, plastid	63.09	61.68
HORVU1Hr1G078340.3	Barley	plastid	67.84	60.98
AT1G14910.1	Thale cress	mitochondrion	70.65	58.09
Zm00001d043773_P003	Maize	cytosol	63.62	57.74
Bra026647.1-P	Field mustard	cytosol	72.41	57.22
CDY45299	Canola	mitochondrion	68.37	56.54
CDY53525	Canola	cytosol, mitochondrion	69.24	56.53
KRH02791	Soybean	cytosol	56.59	56.1
KRH19094	Soybean	cytosol	56.41	55.92
KRH12315	Soybean	cytosol	58.52	55.87
KRH37330	Soybean	cytosol	57.47	54.87
KRH20163	Soybean	cytosol	50.79	52.93
KRH03643	Soybean	mitochondrion	50.97	52.92
Bra026179.1-P	Field mustard	cytosol, mitochondrion	68.37	50.78
KRH05593	Soybean	cytosol	5.8	38.37
KRH54979	Soybean	cytosol	31.81	35.77
KRH58332	Soybean	mitochondrion	31.11	30.26
KRH10492	Soybean	cytosol, mitochondrion	31.11	29.7
KRH43936	Soybean	cytosol, mitochondrion	30.93	29.68
KRH52429	Soybean	endoplasmic reticulum	32.16	28.55
KRH61760	Soybean	mitochondrion	32.34	28.22
KRH20132	Soybean	cytosol	29.53	27.45
KRH41749	Soybean	cytosol	13.36	26.86
KRH60451	Soybean	mitochondrion	19.68	25.28
KRH58584	Soybean	mitochondrion	16.7	23.81
KRH42490	Soybean	cytosol	16.87	23.76
KRH09259	Soybean	cytosol, nucleus, peroxisome	17.93	23.72
KRH38757	Soybean	cytosol, nucleus, peroxisome	17.57	23.04
KRG89239	Soybean	cytosol, mitochondrion	13.88	20.57
KRH49763	Soybean	mitochondrion	13.71	20.05
KRH17907	Soybean	cytosol	23.73	18.49

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100776929	MapMan:22.1.6.2	EMBL:ACUP02003277	InterPro:ANTH_dom
InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	EnsemblPlantsGene:GLYMA_05G139700	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136
GO:GO:0030276	GO:GO:0048268	UniProt:I1K3D9	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712
EnsemblPlants:KRH58627	ProteinID:KRH58627	ProteinID:KRH58627.1	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF54	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI00023393E5	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:33228561..33235637

Molecular Weight (calculated)

62909.3 Da

IEP (calculated)

4.709

GRAVY (calculated)

-0.344

Length

569 amino acids

Sequence
(BLAST)

001: MGTLQSWRRA YGAIKDTTKV GLAHVNSDYA DLDVAIVKAT NHVECPPKER HLRKILFATS AVRPRADVAY CIHALSRRLA KTRNWTVALK TLIVIHRLLR
101: EGDPTFREEL LNFSQRGRIL QLSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRILKYD IEAERLPKPA EGQEKGCSKT RDLDSEELLE QLPALQQLLY
201: RLVGCRPEGA AVSNYVIQYA LALVLKESFK IYCAINDGII NLVDKFFEMP RHEAIKALDA YKRAGQQAAS LSDFYDVCKG LELARNFQFP VLREPPQSFL
301: TTMEEYIKEA PRVVTVPTEP LLQLTYRPEE VLAIEDAKPS DEEQEPPVPV DNNVVVSDSE SAPPPPPPSA HNNFETGDLL GLNDTAPDAS SIEERNALAL
401: AIVPTETGAT SAFNSTASQT KDFDPTGWEL ALVSTPSTDI SAANERQLAG GLDSLTLNSL YDEAAYRSAQ QPVYGAPAPN PFEVQDPFAL SSSIPPPPAV
501: QMAAMQQQAN PFGSYQQPFQ PQPQLQQQQQ LMLMNPANPF GDAGFGAFPA SNPVPHPQNN NPFGSTGLL

Best Arabidopsis Sequence Match ( AT2G01600.1 )
(BLAST)

001: MGTLQSWRKA YGALKDSTKV GLVRVNSEYA DLDVAIVKAT NHVECPPKDR HLRKIFAATS VTRARADVAY CIHALSRRLH KTRNWTVALK TLIVIHRLLR
101: EGDPTFREEL LNFSQRGRIL QLSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRVLKYD TEAERLPKSN PGQDKGYSRT RDLDGEELLE QLPALQQLLY
201: RLIGCRPEGA ANHNHVIQYA LALVLKESFK VYCAINDGII NLIDKFFEMA KHEAITSLEI YKRAGQQARS LSDFYEACKG LELARNFQFP VLREPPQSFL
301: TTMEEYIKEA PRVVDVPAEP LLLTYRPDDG LTTEDTEPSH EEREMLPSDD VVVVSEETEP SPPPPPSANA QNFIDTDDLW GLNTGAPDTS VIEDQNALAL
401: AIVSTDADPP TPHFGQPNNY DPTGWELALV TAPSSDISAS TERKLAGGLD TLTLSSLYDD GAYIASQRPV YGAPAPNPFA SHDPFASSNG TAPPPQQQAV
501: NNPFGAYQQT YQHQPQPTYQ HQSNPPTNNS NPFGDFGEFP VNPVSQQPNT SGYGDFSVNQ HNNPFRSTGL I

Arabidopsis Description

Putative clathrin assembly protein At2g01600 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBH2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.