Factsheet for Solyc04g007860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075923	Potato	cytosol	98.58	98.58
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	77.26	76.72
KRH58627	Soybean	nucleus	77.44	76.63
KRH42533	Soybean	cytosol	76.91	76.23
KRH38239	Soybean	cytosol	71.58	72.74
AT2G01600.1	Thale cress	cytosol, mitochondrion	70.87	69.88
Bra024871.1-P	Field mustard	cytosol	70.34	69.35
CDY17660	Canola	cytosol	70.34	69.35
CDY36239	Canola	cytosol	70.16	69.18
GSMUA_Achr4P13420_001	Banana	cytosol	65.54	69.1
Bra017439.1-P	Field mustard	cytosol	69.8	68.83
CDY04095	Canola	cytosol	69.8	68.83
GSMUA_Achr9P21890_001	Banana	cytosol	68.38	68.75
CDY17459	Canola	cytosol	69.45	68.6
Solyc12g017440.1.1	Tomato	cytosol	36.23	68.23
CDY09433	Canola	cytosol, mitochondrion	69.63	67.94
Zm00001d038892_P001	Maize	mitochondrion	67.85	67.85
Os05t0549000-01	Rice	plasma membrane	68.21	67.72
CDY48813	Canola	cytosol	69.98	67.58
EES19899	Sorghum	cytosol, mitochondrion, plastid	67.5	67.38
TraesCS1D01G375800.1	Wheat	cytosol, mitochondrion, plastid	66.43	66.19
TraesCS1A01G369700.1	Wheat	cytosol, mitochondrion, plastid	66.25	66.02
TraesCS1B01G388800.1	Wheat	cytosol, mitochondrion, plastid	66.07	65.96
Os01t0694900-01	Rice	cytosol	66.07	65.49
EES01312	Sorghum	cytosol	64.83	64.83
TraesCS3A01G258900.1	Wheat	cytosol	63.94	64.4
TraesCS3B01G292000.2	Wheat	cytosol, mitochondrion, plastid	63.94	64.06
TraesCS3D01G259000.2	Wheat	cytosol	63.77	63.77
Zm00001d009452_P007	Maize	cytosol, mitochondrion, plastid	61.81	59.79
HORVU1Hr1G078340.3	Barley	plastid	66.25	58.93
Zm00001d043773_P003	Maize	cytosol	62.7	56.3
Bra026647.1-P	Field mustard	cytosol	69.27	54.17
AT1G14910.1	Thale cress	mitochondrion	66.43	54.05
Solyc02g043810.2.1	Tomato	cytosol	54.17	52.77
CDY53525	Canola	cytosol, mitochondrion	64.48	52.08
CDY45299	Canola	mitochondrion	63.59	52.03
Solyc07g007820.2.1	Tomato	cytosol	48.13	48.13
Bra026179.1-P	Field mustard	cytosol, mitochondrion	63.59	46.74
Solyc12g010530.1.1	Tomato	cytosol	38.72	36.7
Solyc12g017430.1.1	Tomato	nucleus	12.26	32.55
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	30.2	29.26
Solyc08g059660.1.1	Tomato	cytosol	30.55	27.04
Solyc06g011450.1.1	Tomato	cytosol	29.48	27.04
Solyc07g008060.1.1	Tomato	cytosol	29.31	26.87
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	18.29	24.88
Solyc11g044860.1.1	Tomato	cytosol	22.02	24.8
Solyc04g008350.1.1	Tomato	mitochondrion	15.1	21.63
Solyc01g005070.2.1	Tomato	mitochondrion	15.28	21.61
Solyc12g006000.1.1	Tomato	cytosol	24.33	18.82
Solyc07g049380.1.1	Tomato	cytosol	22.56	17.09

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	UniProt:G8Z257	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
EMBL:GQ261235	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942
PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:Solyc04g007860.2
EnsemblPlants:Solyc04g007860.2.1	UniParc:UPI000243C639	SEG:seg	:	:	:

Description

Hop-interacting protein THI028 [Source:UniProtKB/TrEMBL;Acc:G8Z257]

Coordinates

chr4:+:1532848..1539431

Molecular Weight (calculated)

62371.1 Da

IEP (calculated)

4.940

GRAVY (calculated)

-0.337

Length

563 amino acids

Sequence
(BLAST)

001: MGTLQTWRKA YGALKDHTTV GLAHVNSDFK DVDVAIVKAT NHVECPPKDR HLRKLLVFTS AMRPRADVAY CIHALARRLA KTHNWTVALK TLIVIHRTLR
101: EGDPTFREEL LNFQQRGHVL QMSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRVLKYD IEGERLPKPA QGQEKGYSRT RELPSEELLE QLPALQQLLY
201: RLIGCRPEGA ALGNYVIQYA LALVLKESFK IYCAINDGII NLIDKFFDMP RHEAIKALDI YKRAGQQAMN LSDFYGVCKG LELARNFQFP VLREPPQSFL
301: VTMEEYIKEA PRIVSVPIET LDYPERLMLT YKQEDEPSAS EDAQDSANET PPPLPLDDAV VSTTEAPSPP MPPPPSSLES DDLLGLNAPS GYASAIEDSN
401: ALALAIVPSG TTPFDSNPAQ PKDFDPTGWE LALVTTPSSD LSAAQERQLA GGLDSLTLNS LYDEGAYRAS QRPVYGAPAP NPFEVADPFA MSTTMPPPPS
501: VQMAAVPQHQ MNPFGPFEPA YPQPQNPMLN PHNPFGDAGF SAFPTNHVAH PQTTNPFGST GLI

Best Arabidopsis Sequence Match ( AT2G01600.1 )
(BLAST)

001: MGTLQSWRKA YGALKDSTKV GLVRVNSEYA DLDVAIVKAT NHVECPPKDR HLRKIFAATS VTRARADVAY CIHALSRRLH KTRNWTVALK TLIVIHRLLR
101: EGDPTFREEL LNFSQRGRIL QLSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRVLKYD TEAERLPKSN PGQDKGYSRT RDLDGEELLE QLPALQQLLY
201: RLIGCRPEGA ANHNHVIQYA LALVLKESFK VYCAINDGII NLIDKFFEMA KHEAITSLEI YKRAGQQARS LSDFYEACKG LELARNFQFP VLREPPQSFL
301: TTMEEYIKEA PRVVDVPAEP LLLTYRPDDG LTTEDTEPSH EEREMLPSDD VVVVSEETEP SPPPPPSANA QNFIDTDDLW GLNTGAPDTS VIEDQNALAL
401: AIVSTDADPP TPHFGQPNNY DPTGWELALV TAPSSDISAS TERKLAGGLD TLTLSSLYDD GAYIASQRPV YGAPAPNPFA SHDPFASSNG TAPPPQQQAV
501: NNPFGAYQQT YQHQPQPTYQ HQSNPPTNNS NPFGDFGEFP VNPVSQQPNT SGYGDFSVNQ HNNPFRSTGL I

Arabidopsis Description

Putative clathrin assembly protein At2g01600 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBH2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.