Factsheet for Solyc12g017440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0661400-01	Rice	cytosol	53.51	64.0
Os06t0699800-00	Rice	cytosol	62.88	42.82
Solyc02g043810.2.1	Tomato	cytosol	81.61	42.21
GSMUA_Achr7P04960_001	Banana	cytosol	71.91	39.09
TraesCS7B01G430700.2	Wheat	cytosol	18.39	38.46
GSMUA_Achr1P15690_001	Banana	cytosol	71.24	38.1
GSMUA_Achr4P20660_001	Banana	cytosol	70.57	37.88
EES06356	Sorghum	cytosol	70.23	36.84
GSMUA_Achr3P05590_001	Banana	cytosol	67.22	36.81
Os02t0175700-01	Rice	plasma membrane	71.57	36.71
Solyc04g007860.2.1	Tomato	cytosol, plastid	68.23	36.23
Zm00001d015430_P001	Maize	cytosol	69.9	36.22
TraesCS6B01G181800.1	Wheat	cytosol	68.56	35.53
HORVU7Hr1G097510.7	Barley	mitochondrion	60.2	35.23
KXG20534	Sorghum	cytosol, mitochondrion	68.23	35.17
Zm00001d036672_P005	Maize	cytosol	67.56	35.13
TraesCS7B01G393800.2	Wheat	cytosol	66.89	35.09
TraesCS6D01G143700.1	Wheat	cytosol	68.56	34.92
HORVU7Hr1G109970.5	Barley	cytosol	66.22	34.62
TraesCS7D01G476900.2	Wheat	cytosol	66.89	34.54
TraesCS7A01G490500.2	Wheat	cytosol	65.89	34.32
TraesCS6A01G154100.1	Wheat	cytosol	67.22	34.3
KXG20765	Sorghum	mitochondrion	63.55	33.45
HORVU6Hr1G030980.1	Barley	cytosol	69.23	33.44
TraesCS7B01G322300.1	Wheat	mitochondrion	61.2	32.39
TraesCS7D01G414100.1	Wheat	mitochondrion	61.2	32.22
TraesCS7A01G421900.1	Wheat	mitochondrion	60.87	31.93
Solyc07g007820.2.1	Tomato	cytosol	56.52	30.02
Solyc12g010530.1.1	Tomato	cytosol	50.17	25.25
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	28.09	20.29
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	36.79	18.93
Solyc01g005070.2.1	Tomato	mitochondrion	25.08	18.84
Solyc04g008350.1.1	Tomato	mitochondrion	24.75	18.83
Solyc08g059660.1.1	Tomato	cytosol	35.79	16.82
Solyc06g011450.1.1	Tomato	cytosol	33.44	16.29
Solyc07g008060.1.1	Tomato	cytosol	32.44	15.8
Solyc12g006000.1.1	Tomato	cytosol	35.45	14.56
Solyc07g049380.1.1	Tomato	cytosol	35.45	14.27
Solyc11g044860.1.1	Tomato	cytosol	21.4	12.8
PGSC0003DMT400025029	Potato	nucleus	5.35	5.63
Solyc12g017430.1.1	Tomato	nucleus	1.34	1.89

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	UniProt:K4DD77	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF56	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:Solyc12g017440.1	EnsemblPlants:Solyc12g017440.1.1
UniParc:UPI000276940E	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:6690841..6693282

Molecular Weight (calculated)

34253.8 Da

IEP (calculated)

9.357

GRAVY (calculated)

-0.119

Length

299 amino acids

Sequence
(BLAST)

001: MEKIRKAYGK LKDSTKVGLA KVKSEFKDLD IAILKATNHV ESPPKERHIA RIIVATSITC PRADVAYCIH ALSKRLSKTR NWIVVVKTLI VIHRVLRDGD
101: PSFKEELLRC SQRGQIFQLS NFKDDSSHLG WDCSAWVRTY ALFLEERLEC FRTMKNDIVA ERSTKPSVGI SKVHCRTRIL NAEELLEQLP ALQQLLYRLT
201: GCQPEGGACY NFLIQYALAL VLKESFKIYC AINDGIINLV DYFFEMSKSD AIKALSIYKR AGQQAEHLAH FYDFCRGLDV VRTFQFPTLK QVFFPHPFG

Best Arabidopsis Sequence Match ( AT5G57200.1 )
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Arabidopsis Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.