Factsheet for Solyc02g043810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036570	Potato	cytosol	95.67	96.51
Solyc12g017440.1.1	Tomato	cytosol	42.21	81.61
CDY42239	Canola	cytosol	42.21	72.4
Os06t0661400-01	Rice	cytosol	29.58	68.4
VIT_11s0103g00620.t01	Wine grape	cytosol	66.78	65.31
KRH37330	Soybean	cytosol	66.44	64.43
GSMUA_Achr7P04960_001	Banana	cytosol	60.9	64.0
KRH12315	Soybean	cytosol	65.22	63.26
GSMUA_Achr1P15690_001	Banana	cytosol	61.07	63.15
KRH02791	Soybean	cytosol	61.94	62.37
GSMUA_Achr4P20660_001	Banana	cytosol	59.86	62.12
CDY52732	Canola	cytosol	62.8	62.05
CDY38276	Canola	cytosol	63.49	61.99
AT5G57200.1	Thale cress	cytosol	62.98	61.59
Bra002750.1-P	Field mustard	cytosol	63.15	61.55
KRH19094	Soybean	cytosol	61.07	61.5
Bra020460.1-P	Field mustard	cytosol	62.11	60.44
CDY47927	Canola	cytosol	52.77	60.4
AT4G25940.1	Thale cress	cytosol	62.11	59.73
GSMUA_Achr3P05590_001	Banana	cytosol	55.71	58.97
EES06356	Sorghum	cytosol	58.13	58.95
Bra013934.1-P	Field mustard	cytosol	60.9	58.57
CDX94400	Canola	cytosol	60.21	58.39
CDX89382	Canola	cytosol	60.38	58.07
TraesCS6B01G181800.1	Wheat	cytosol	57.61	57.71
KXG20534	Sorghum	cytosol, mitochondrion	57.61	57.41
Zm00001d015430_P001	Maize	cytosol	57.27	57.37
Os02t0175700-01	Rice	plasma membrane	57.79	57.29
TraesCS6D01G143700.1	Wheat	cytosol	58.13	57.24
Zm00001d036672_P005	Maize	cytosol	56.92	57.22
TraesCS6A01G154100.1	Wheat	cytosol	57.44	56.66
HORVU7Hr1G109970.5	Barley	cytosol	54.84	55.42
KXG20765	Sorghum	mitochondrion	54.15	55.11
TraesCS7B01G393800.2	Wheat	cytosol	54.33	55.09
TraesCS7D01G476900.2	Wheat	cytosol	55.02	54.92
TraesCS7A01G490500.2	Wheat	cytosol	54.15	54.53
Os06t0699800-00	Rice	cytosol	41.35	54.44
Solyc04g007860.2.1	Tomato	cytosol, plastid	52.77	54.17
HORVU6Hr1G030980.1	Barley	cytosol	57.79	53.96
TraesCS7D01G414100.1	Wheat	mitochondrion	52.6	53.52
TraesCS7B01G322300.1	Wheat	mitochondrion	52.25	53.45
TraesCS7A01G421900.1	Wheat	mitochondrion	52.6	53.33
HORVU7Hr1G097510.7	Barley	mitochondrion	46.19	52.25
Solyc07g007820.2.1	Tomato	cytosol	47.75	49.02
TraesCS7B01G430700.2	Wheat	cytosol	12.11	48.95
Solyc12g017430.1.1	Tomato	nucleus	16.78	45.75
Solyc12g010530.1.1	Tomato	cytosol	39.97	38.89
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	30.28	30.12
Solyc08g059660.1.1	Tomato	cytosol	29.93	27.2
Solyc07g008060.1.1	Tomato	cytosol	28.2	26.55
Solyc06g011450.1.1	Tomato	cytosol	28.03	26.38
Solyc11g044860.1.1	Tomato	cytosol	22.49	26.0
Solyc04g008350.1.1	Tomato	mitochondrion	15.92	23.41
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	16.26	22.71
Solyc01g005070.2.1	Tomato	mitochondrion	15.05	21.86
Solyc12g006000.1.1	Tomato	cytosol	24.57	19.51
Solyc07g049380.1.1	Tomato	cytosol	23.01	17.9

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	ncoils:Coil
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:K4B5X2	PFAM:PF07651	PFscan:PS50942
PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:Solyc02g043810.2
EnsemblPlants:Solyc02g043810.2.1	UniParc:UPI0002767ACD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:1675653..1679241

Molecular Weight (calculated)

65467.9 Da

IEP (calculated)

5.316

GRAVY (calculated)

-0.443

Length

578 amino acids

Sequence
(BLAST)

001: MESFRKAYGA LKDSTKVGLA KVNSEFKDLD IAIVKATNHV ESPPKERHVA MIFAATSVTR PRADVAYCIH ALSRRLAKTR NWIVALKSLI VIHRVLREGD
101: PTFKEELLHF SHRGHIFQIS NFKDESSPLA WDCSAWVRTY GLFLEERLEC FRNLKYDIDG ERLTKTTPGI NKVHSRTRLL NGEELLNQLP ALQQLLYRLI
201: GCQPEGGACY NFLIQYALAL VLKESFKIYC AINDGIINLV DFFFEMSKHD AMKALNIYKR AGKQAESLAH FYDFCRGLDL ARTFQFPVLK QPPASFLATM
301: EEYIKEAPQT GSMSSRRLEY RETKKEAEKP VEPILEEIEE RVENDKEEEK VEVQEEPEPE IQVEETPPTD EPVDLLGLNQ VVDPKIVELE ESNALALAII
401: QPGKENPSAS FQLSEIGSTS GWELALVTAS SSNTSQVAPD KKLAGGFDKL LLDSLYEDDA TRRQIQLQTA GYSAGYGYEI PGQNPFNQHD PFAMSNNIAP
501: PTNVQMAIMS QQQQQQQQQL LLMQQQQYQQ YPQQNMMMVS HSQYQAQQIP YMASANPFGD PFSYQSTSIP PKGNHSLL

Best Arabidopsis Sequence Match ( AT5G57200.1 )
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Arabidopsis Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.