Factsheet for PGSC0003DMT400036570

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g043810.2.1	Tomato	cytosol	96.51	95.67
CDY42239	Canola	cytosol	42.58	72.4
Os06t0661400-01	Rice	cytosol	29.84	68.4
VIT_11s0103g00620.t01	Wine grape	cytosol	66.84	64.81
GSMUA_Achr7P04960_001	Banana	cytosol	61.43	64.0
KRH37330	Soybean	cytosol	65.97	63.42
GSMUA_Achr1P15690_001	Banana	cytosol	61.26	62.79
KRH12315	Soybean	cytosol	64.75	62.25
CDY52732	Canola	cytosol	63.18	61.88
CDY38276	Canola	cytosol	63.87	61.82
KRH02791	Soybean	cytosol	61.78	61.67
GSMUA_Achr4P20660_001	Banana	cytosol	59.69	61.4
Bra002750.1-P	Field mustard	cytosol	63.53	61.38
AT5G57200.1	Thale cress	cytosol	63.18	61.25
KRH19094	Soybean	cytosol	60.56	60.45
CDY47927	Canola	cytosol	53.05	60.2
Bra020460.1-P	Field mustard	cytosol	62.3	60.1
AT4G25940.1	Thale cress	cytosol	62.3	59.4
EES06356	Sorghum	cytosol	58.81	59.12
GSMUA_Achr3P05590_001	Banana	cytosol	56.02	58.79
Bra013934.1-P	Field mustard	cytosol	61.08	58.24
CDX94400	Canola	cytosol	60.56	58.22
CDX89382	Canola	cytosol	60.56	57.74
Zm00001d015430_P001	Maize	cytosol	57.59	57.19
TraesCS6B01G181800.1	Wheat	cytosol	57.59	57.19
Zm00001d036672_P005	Maize	cytosol	57.24	57.04
Os02t0175700-01	Rice	plasma membrane	57.94	56.95
KXG20534	Sorghum	cytosol, mitochondrion	57.59	56.9
TraesCS6D01G143700.1	Wheat	cytosol	57.94	56.56
TraesCS6A01G154100.1	Wheat	cytosol	57.07	55.8
HORVU7Hr1G109970.5	Barley	cytosol	55.5	55.59
TraesCS7B01G393800.2	Wheat	cytosol	54.97	55.26
Os06t0699800-00	Rice	cytosol	42.06	54.9
PGSC0003DMT400075923	Potato	cytosol	53.75	54.71
KXG20765	Sorghum	mitochondrion	54.1	54.58
TraesCS7D01G476900.2	Wheat	cytosol	55.15	54.58
TraesCS7A01G490500.2	Wheat	cytosol	54.45	54.36
HORVU6Hr1G030980.1	Barley	cytosol	57.77	53.47
TraesCS7B01G322300.1	Wheat	mitochondrion	52.36	53.1
TraesCS7D01G414100.1	Wheat	mitochondrion	52.36	52.82
TraesCS7A01G421900.1	Wheat	mitochondrion	52.53	52.81
HORVU7Hr1G097510.7	Barley	mitochondrion	46.6	52.25
TraesCS7B01G430700.2	Wheat	cytosol	12.22	48.95
PGSC0003DMT400017184	Potato	cytosol	33.86	45.01
PGSC0003DMT400025029	Potato	nucleus	20.94	42.25
PGSC0003DMT400020390	Potato	cytosol	40.31	38.89
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	30.02	29.55
PGSC0003DMT400059062	Potato	cytosol	29.14	28.02
PGSC0003DMT400040963	Potato	cytosol	30.72	27.46
PGSC0003DMT400035762	Potato	cytosol	29.67	26.6
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	28.27	26.3
PGSC0003DMT400075705	Potato	mitochondrion	15.88	23.21
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	17.28	22.5
PGSC0003DMT400058608	Potato	mitochondrion	15.53	22.25
PGSC0003DMT400036091	Potato	cytosol	24.08	19.01
PGSC0003DMT400001773	Potato	nucleus	23.04	17.53

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:102580495	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
ncoils:Coil	InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276
GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M1B3U8	PFAM:PF07651
EnsemblPlantsGene:PGSC0003DMG400014096	PGSC:PGSC0003DMG400014096	EnsemblPlants:PGSC0003DMT400036570	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI000295F6A0	RefSeq:XP_006346667.1	SEG:seg

Description

Clathrin assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014096]

Coordinates

chr2:-:2724420..2728276

Molecular Weight (calculated)

64772.1 Da

IEP (calculated)

5.612

GRAVY (calculated)

-0.436

Length

573 amino acids

Sequence
(BLAST)

001: MESFRKAYGA LKDSTKVGLA KVNSEFKDLD IAIVKATNHV ESPPKERHVA MIFAATSVTR PRADVAYCIH ALSRRLAKTR NWIVALKSLI VIHRVLREGD
101: PTFKEELLHF SHRGHIFQIS NFKDESSPLA WDCSAWVRTY GLFLEERLEC FRNLKYDIDG ERLTKTTPGI NKVHSRTRLL NGEELLNQLP ALQQLLYRLI
201: GCQPEGGACY NFLIQYALAL VLKESFKIYC AINDGIINLV DFFFEMSKHD AIKALNIYKR AGKQAESLAH FYDFCRGLDL ARTFQFPVLK QPPASFLATM
301: EEYIKEAPQT GSISSRRLEY RETKKEPEKP VEPILEEMEE QVENDKEEEV EAQEEPQPEI QLEETPPTEE PVDLLGLNQV DPKIAELEES NALALAIIQP
401: GKENPSASFQ LSEIGSTSGW ELALVTASSN NTSQVAPDKK LAGGFDKLLL DSLYEDDATR RQIQLQNAGY SAGCGYEIPG QNPFNQHDPF AMSNNIAPPT
501: NVQMAIMSQQ QQQQQLLLMQ HHHHQFPQQN MMMVSHSQYQ AQQIPYMASA NPFGDPFSYQ STSIPPKGNH SLL

Best Arabidopsis Sequence Match ( AT5G57200.1 )
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Arabidopsis Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.