Factsheet for AT4G25940.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94400	Canola	cytosol	89.68	90.44
Bra013934.1-P	Field mustard	cytosol	89.68	89.68
CDX89382	Canola	cytosol	89.52	89.52
AT5G57200.1	Thale cress	cytosol	82.36	83.76
Os06t0661400-01	Rice	cytosol	27.45	66.0
KRH12315	Soybean	cytosol	65.39	65.94
KRH37330	Soybean	cytosol	65.06	65.6
VIT_11s0103g00620.t01	Wine grape	cytosol	63.73	64.81
KRH19094	Soybean	cytosol	61.23	64.11
KRH02791	Soybean	cytosol	60.57	63.41
GSMUA_Achr7P04960_001	Banana	cytosol	57.9	63.27
PGSC0003DMT400036570	Potato	cytosol	59.4	62.3
Solyc02g043810.2.1	Tomato	cytosol	59.73	62.11
GSMUA_Achr1P15690_001	Banana	cytosol	56.74	61.0
GSMUA_Achr3P05590_001	Banana	cytosol	54.41	59.89
GSMUA_Achr4P20660_001	Banana	cytosol	55.24	59.6
EES06356	Sorghum	cytosol	53.91	56.84
KXG20765	Sorghum	mitochondrion	52.58	55.63
KXG20534	Sorghum	cytosol, mitochondrion	53.58	55.52
Zm00001d036672_P005	Maize	cytosol	52.58	54.96
Zm00001d015430_P001	Maize	cytosol	52.75	54.94
TraesCS6B01G181800.1	Wheat	cytosol	52.08	54.25
Os06t0699800-00	Rice	cytosol	39.6	54.21
Os02t0175700-01	Rice	plasma membrane	52.58	54.2
AT2G01600.1	Thale cress	cytosol, mitochondrion	51.41	54.12
TraesCS7B01G393800.2	Wheat	cytosol	51.08	53.86
HORVU7Hr1G109970.5	Barley	cytosol	51.08	53.67
TraesCS6D01G143700.1	Wheat	cytosol	52.41	53.66
TraesCS7D01G476900.2	Wheat	cytosol	51.58	53.54
TraesCS7A01G490500.2	Wheat	cytosol	51.08	53.48
TraesCS7D01G414100.1	Wheat	mitochondrion	49.92	52.82
TraesCS7A01G421900.1	Wheat	mitochondrion	50.08	52.81
TraesCS7B01G322300.1	Wheat	mitochondrion	49.58	52.74
TraesCS6A01G154100.1	Wheat	cytosol	51.41	52.73
HORVU7Hr1G097510.7	Barley	mitochondrion	44.26	52.05
HORVU6Hr1G030980.1	Barley	cytosol	52.58	51.05
AT5G35200.2	Thale cress	cytosol	43.09	47.61
TraesCS7B01G430700.2	Wheat	cytosol	10.98	46.15
AT1G14910.1	Thale cress	mitochondrion	48.92	42.49
AT2G25430.1	Thale cress	cytosol	30.95	28.48
AT4G32285.2	Thale cress	cytosol	28.95	27.4
AT1G03050.1	Thale cress	cytosol, mitochondrion	26.29	26.38
AT4G02650.1	Thale cress	mitochondrion	25.12	24.71
AT1G25240.2	Thale cress	mitochondrion	15.47	24.67
AT1G68110.1	Thale cress	mitochondrion	13.64	21.64
AT1G33340.1	Thale cress	cytosol, mitochondrion, nucleus	13.31	21.39
AT2G01920.1	Thale cress	mitochondrion	10.82	20.83
AT1G14686.1	Thale cress	cytosol	10.98	19.47
AT1G05020.1	Thale cress	cytosol	20.97	19.3

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	EntrezGene:828700	ProteinID:AEE85135.1	InterPro:ANTH_dom
ArrayExpress:AT4G25940	EnsemblPlantsGene:AT4G25940	RefSeq:AT4G25940	TAIR:AT4G25940	RefSeq:AT4G25940-TAIR-G	EnsemblPlants:AT4G25940.1
TAIR:AT4G25940.1	EMBL:AY070045	EMBL:AY096427	Unigene:At.28423	ProteinID:CAB39659.1	ProteinID:CAB79449.1
InterPro:Clathrin_AP_dom2	ncoils:Coil	InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005905	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276
GO:GO:0031410	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	RefSeq:NP_194324.2
PFAM:PF07651	PO:PO:0000013	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017
PO:PO:0001054	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007616	PO:PO:0008019	PO:PO:0009025	PO:PO:0009029	PO:PO:0009046
PO:PO:0009047	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	UniProt:Q8VYT2
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI00000A8FFF	SEG:seg	:

Description

Putative clathrin assembly protein At4g25940 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYT2]

Coordinates

chr4:-:13169506..13172904

Molecular Weight (calculated)

67771.4 Da

IEP (calculated)

4.849

GRAVY (calculated)

-0.621

Length

601 amino acids

Sequence
(BLAST)

001: MATFNSFRKA VGAIKDSTTV SIAKVNSEFK DLDVAIVKAT NHVESAPKER HIRRIFSATS VVQPRADVAY CIHALAKRLS KTRNWVVAIK VLIVIHRTLR
101: EGDPTFREEL LNYSHRGHIL RISNFKDDTS PLAWDCSAWI RTYALFLEER LECYRVLKYD IEAERLPKGS GASSKNVDFN ASQTYRTRML SDEELLEQLP
201: ALQQLLYRLI GCQPEGSAYS NYLIQYALAL VLKESFKIYC AINDGIINLV DMFFEMSRHD AVKALNIYKR AGQQAENLAD FYEYCKGLEL ARNFQFPTLR
301: QPPPSFLATM EDYIKEAPQS GSVQKKLEYQ EKEEEEQEEE EAEHSVQPEE PAEADNQKEN SEGDQPLIEE EEEDQEKIEE EDAKPSFLID TDDLLGLNEI
401: NPKAAEIEDR NALALAIYPP GHEAPGPSNI LSLIETGGSG WELALVTPQN NNNNNNPRPA PNTKLAGGFD NLLLDSLYED DSARRQIQLT NAGYGHGGID
501: TTAAPPNPFQ MQQDPFAMSN NIAPPTNVQM AMQQQQQQQM TMMHQSPYNY THPHDYHQNH HHHQFSAGPS PSNPFGDAFL ALPPPPGSAG PQQNNHHHML
601: L

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.