Factsheet for PGSC0003DMT400075705

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g008350.1.1	Tomato	mitochondrion	94.13	93.89
PGSC0003DMT400058608	Potato	mitochondrion	59.44	58.25
VIT_01s0011g06370.t01	Wine grape	mitochondrion	45.92	46.75
KRH42490	Soybean	cytosol	45.15	43.81
AT1G25240.2	Thale cress	mitochondrion	42.09	43.77
CDY64692	Canola	mitochondrion	42.09	43.54
KRG89239	Soybean	cytosol, mitochondrion	42.6	43.49
Bra012491.1-P	Field mustard	mitochondrion	41.84	43.39
KRH58584	Soybean	mitochondrion	43.88	43.11
CDY60368	Canola	mitochondrion	41.33	42.86
CDY03862	Canola	mitochondrion	41.33	42.52
Bra024772.1-P	Field mustard	mitochondrion	40.82	42.44
CDY57160	Canola	mitochondrion	40.82	42.33
Bra033960.1-P	Field mustard	mitochondrion	38.27	41.21
CDY12691	Canola	mitochondrion	38.27	41.21
KRH49763	Soybean	mitochondrion	40.82	41.13
CDX81471	Canola	mitochondrion	38.52	41.03
AT1G68110.1	Thale cress	mitochondrion	38.52	39.84
CDY01884	Canola	mitochondrion	35.46	38.94
CDX96047	Canola	mitochondrion	35.46	38.5
Bra004282.1-P	Field mustard	mitochondrion	35.46	38.5
CDY45281	Canola	cytosol	33.67	38.48
AT1G14686.1	Thale cress	cytosol	32.91	38.05
CDY41097	Canola	cytosol	33.16	37.79
Bra026195.1-P	Field mustard	cytosol	33.67	37.08
AT2G01920.1	Thale cress	mitochondrion	27.81	34.94
GSMUA_Achr7P18620_001	Banana	mitochondrion	33.42	33.76
EES13983	Sorghum	mitochondrion	32.4	31.59
GSMUA_Achr8P22890_001	Banana	mitochondrion	31.89	31.49
Zm00001d049990_P001	Maize	mitochondrion	31.12	31.44
Os08t0467300-01	Rice	mitochondrion	31.38	31.06
GSMUA_Achr7P02390_001	Banana	cytosol	32.65	30.77
Zm00001d005869_P001	Maize	mitochondrion	30.1	29.65
EER96828	Sorghum	mitochondrion	29.85	29.1
TraesCS5A01G297400.1	Wheat	mitochondrion	26.53	27.59
GSMUA_Achr3P20230_001	Banana	mitochondrion	23.21	27.49
TraesCS5B01G296700.1	Wheat	mitochondrion	26.79	27.49
Zm00001d031760_P001	Maize	mitochondrion	32.65	26.02
HORVU7Hr1G089710.1	Barley	mitochondrion	11.73	25.99
HORVU5Hr1G078270.1	Barley	cytosol	27.04	24.04
TraesCS5D01G304500.1	Wheat	mitochondrion	26.02	23.08
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	20.15	17.95
PGSC0003DMT400035762	Potato	cytosol	26.28	16.12
PGSC0003DMT400040963	Potato	cytosol	26.02	15.91
PGSC0003DMT400036570	Potato	cytosol	23.21	15.88
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	24.49	15.58
PGSC0003DMT400075923	Potato	cytosol	21.94	15.28
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	21.94	14.78
PGSC0003DMT400020390	Potato	cytosol	21.43	14.14
PGSC0003DMT400059062	Potato	cytosol	21.43	14.09
PGSC0003DMT400036091	Potato	cytosol	22.7	12.26
PGSC0003DMT400001773	Potato	nucleus	22.45	11.69
PGSC0003DMT400017184	Potato	cytosol	12.76	11.6
PGSC0003DMT400025029	Potato	nucleus	6.38	8.8

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:107061993	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M1CVM4	PFAM:PF07651	EnsemblPlantsGene:PGSC0003DMG400029445
PGSC:PGSC0003DMG400029445	EnsemblPlants:PGSC0003DMT400075705	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF19	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI0002958C28	RefSeq:XP_015167607.1	SEG:seg	:	:

Description

Clathrin assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029445]

Coordinates

chr4:-:3249983..3251161

Molecular Weight (calculated)

45303.0 Da

IEP (calculated)

5.147

GRAVY (calculated)

-0.167

Length

392 amino acids

Sequence
(BLAST)

001: MRLWRKVSGL LKDQNSVWIA SLSRRTALRN PDIEAAVIKA TSHDEFSMNM KNVDRVFRWL RLSSTNLKPL IWAISIRTEK TKSWVVAIKV LILMHGLYST
101: RLPCVQRIGR LTFDLSNFED GHSRNIEMQG INEFIRAYFM FLDQKSYFLF MEMEEKRSMV KLNKNMVMQN LENEEKENYS MAQDLVLLEK LQTLLDMLLE
201: IRPLSDSSIV PLILEAMDCV VTEIFDVYSR IRLGIARVLS RINVIGKVEA TLALKIIKKA NIQAVELSLY FEFNRDIGVR NAEICPIVDQ IPNEEIKELE
301: EIIKGASDTS EKIDEINQDI VIYEKMESET KLKTIITNRW ETFDEEHGGD DSSAIVKFTS RINPFADYSE LTSSTNNVPV KPQELPDLIS FT

Best Arabidopsis Sequence Match ( AT1G25240.1 )
(BLAST)

001: MKLWKRASGA LKDRKTLFTI GFSRKTSFRN PDLDSAIIHA TSHDDSSVDY HNAHRVYKWI RSSPANLKPL VHALSSRVNR TRSWIVALKA LMLVHGVLCC
101: KVTSLQEIRR LPFDLSDFSD GHSRPSKTWG FNAFIRAYFS FLDQYSFFLS DQIRRRHKKP QLDSVNQELE RIEKLQSLLH MLLQIRPMAD NMKKTLILEA
201: MDCVVIEIFD IYGRICSAIA KLLIKIHPAA GKAEAVIALK IVKKATSQGE DLALYFEFCK EFGVSNAHDI PKFVTIPEED IKAIEKVING VEEEEVKKKE
301: DEVEEEKSII LVERPELQTI ITDKWEIFED DFCFTCKDIK ETDQHRKFNM DPSPLPLIVI DEPVYFTHTL PDLITF

Arabidopsis Description

ENTH/VHS/GAT family protein [Source:TAIR;Acc:AT1G25240]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.