Factsheet for GSMUA_Achr7P18620_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P20230_001	Banana	mitochondrion	51.8	60.73
GSMUA_Achr8P22890_001	Banana	mitochondrion	56.19	54.91
GSMUA_Achr7P02390_001	Banana	cytosol	55.41	51.68
Os08t0467300-01	Rice	mitochondrion	51.03	50.0
EES13983	Sorghum	mitochondrion	51.29	49.5
Zm00001d049990_P001	Maize	mitochondrion	48.97	48.97
TraesCS5A01G297400.1	Wheat	mitochondrion	44.85	46.15
TraesCS5B01G296700.1	Wheat	mitochondrion	45.1	45.81
HORVU7Hr1G089710.1	Barley	mitochondrion	20.1	44.07
EER96828	Sorghum	mitochondrion	45.36	43.78
Zm00001d005869_P001	Maize	mitochondrion	43.04	41.96
HORVU5Hr1G078270.1	Barley	cytosol	45.36	39.91
Zm00001d031760_P001	Maize	mitochondrion	50.0	39.43
TraesCS5D01G304500.1	Wheat	mitochondrion	44.59	39.14
VIT_01s0011g06370.t01	Wine grape	mitochondrion	36.6	36.88
CDY01884	Canola	mitochondrion	33.51	36.41
CDY57160	Canola	mitochondrion	35.31	36.24
PGSC0003DMT400058608	Potato	mitochondrion	37.11	36.0
CDY60368	Canola	mitochondrion	35.05	35.98
CDY03862	Canola	mitochondrion	35.31	35.96
CDX81471	Canola	mitochondrion	34.02	35.87
AT1G25240.2	Thale cress	mitochondrion	34.79	35.81
Bra024772.1-P	Field mustard	mitochondrion	34.79	35.81
CDY12691	Canola	mitochondrion	33.51	35.71
Bra033960.1-P	Field mustard	mitochondrion	33.51	35.71
CDY64692	Canola	mitochondrion	34.79	35.62
Solyc01g005070.2.1	Tomato	mitochondrion	36.34	35.43
Bra012491.1-P	Field mustard	mitochondrion	34.28	35.19
Bra004282.1-P	Field mustard	mitochondrion	32.73	35.18
CDX96047	Canola	mitochondrion	32.73	35.18
AT1G68110.1	Thale cress	mitochondrion	33.51	34.3
KRH42490	Soybean	cytosol	35.57	34.16
PGSC0003DMT400075705	Potato	mitochondrion	33.76	33.42
Solyc04g008350.1.1	Tomato	mitochondrion	33.76	33.33
KRH58584	Soybean	mitochondrion	34.02	33.08
AT2G01920.1	Thale cress	mitochondrion	26.29	32.69
AT1G14686.1	Thale cress	cytosol	27.84	31.86
KRG89239	Soybean	cytosol, mitochondrion	31.44	31.77
CDY45281	Canola	cytosol	27.84	31.49
CDY41097	Canola	cytosol	27.32	30.81
Bra026195.1-P	Field mustard	cytosol	27.84	30.34
KRH49763	Soybean	mitochondrion	30.41	30.33
GSMUA_Achr7P02300_001	Banana	plastid	20.88	16.04
GSMUA_Achr11P...	Banana	cytosol	18.81	16.01
GSMUA_Achr2P18700_001	Banana	cytosol	20.62	15.97
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	20.88	15.37
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	20.88	15.25
GSMUA_Achr11P...	Banana	cytosol	19.85	14.81
GSMUA_Achr4P13420_001	Banana	cytosol	19.85	14.42
GSMUA_Achr10P...	Banana	mitochondrion	18.56	14.26
GSMUA_Achr7P04960_001	Banana	cytosol	20.1	14.18
GSMUA_Achr3P05590_001	Banana	cytosol	19.85	14.1
GSMUA_Achr5P23570_001	Banana	cytosol	19.33	13.76
GSMUA_Achr9P21890_001	Banana	cytosol	19.85	13.75
GSMUA_Achr4P20660_001	Banana	cytosol	19.59	13.64
GSMUA_Achr1P15690_001	Banana	cytosol	19.33	13.42
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	21.65	13.29
GSMUA_Achr4P05920_001	Banana	cytosol	18.56	13.14
GSMUA_Achr6P03060_001	Banana	cytosol	18.3	12.98

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSMUA_Achr7G18620_001
EnsemblPlants:GSMUA_Achr7P18620_001	EnsemblPlants:GSMUA_Achr7T18620_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0TIP9
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF19	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI000296BAED	SEG:seg	:	:	:

Description

Putative clathrin assembly protein At1g25240 [Source:GMGC_GENE;Acc:GSMUA_Achr7G18620_001]

Coordinates

chr7:+:21399502..21400830

Molecular Weight (calculated)

43091.3 Da

IEP (calculated)

5.201

GRAVY (calculated)

-0.244

Length

388 amino acids

Sequence
(BLAST)

001: MTSTRQWWRR ATAVAKDKWS ICVTRAMGAR HLYRRSPEME AAVIRATSHD ERSVDYKNAG RVFAWARAAP SSLLASLMWT VARRASRTRS WPVALKCLLL
101: AHGLILCSHD APPAARVGRL PFDLSDFHDR YSDSPGFSAF IRAYFRFLDH RSLLPALKGS ASASPVSETE EDRDGNGDDD LERLESLQLL LDLLMQIRPY
201: ADGMEVELVL EAMDCAVIEI FDVYSGICSG IAHFLVGVLG PDPAKPEATT EAMKRRRAAG MQVLRRARAQ SAQLSAYFEL CRALGVLNAA ELPPVEGIPE
301: QDMDDIERMM LCITQGSDDE AEERNRKTPE GGSMTVTADE WVVFEDENHS VNSILDFPDQ ISPSKLWAPV EKPGPTVANG NLRDLISL

Best Arabidopsis Sequence Match ( AT1G25240.1 )
(BLAST)

001: MKLWKRASGA LKDRKTLFTI GFSRKTSFRN PDLDSAIIHA TSHDDSSVDY HNAHRVYKWI RSSPANLKPL VHALSSRVNR TRSWIVALKA LMLVHGVLCC
101: KVTSLQEIRR LPFDLSDFSD GHSRPSKTWG FNAFIRAYFS FLDQYSFFLS DQIRRRHKKP QLDSVNQELE RIEKLQSLLH MLLQIRPMAD NMKKTLILEA
201: MDCVVIEIFD IYGRICSAIA KLLIKIHPAA GKAEAVIALK IVKKATSQGE DLALYFEFCK EFGVSNAHDI PKFVTIPEED IKAIEKVING VEEEEVKKKE
301: DEVEEEKSII LVERPELQTI ITDKWEIFED DFCFTCKDIK ETDQHRKFNM DPSPLPLIVI DEPVYFTHTL PDLITF

Arabidopsis Description

ENTH/VHS/GAT family protein [Source:TAIR;Acc:AT1G25240]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.