Factsheet for PGSC0003DMT400001773

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400066221

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05020.1	PGSC0003DMT400066221	AT2G15270.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g049380.1.1	Tomato	cytosol	92.03	93.27
PGSC0003DMT400036091	Potato	cytosol	60.29	62.53
VIT_12s0059g01330.t01	Wine grape	cytosol	44.09	56.18
CDY18283	Canola	cytosol, nucleus, peroxisome	34.66	54.38
CDY53396	Canola	cytosol	40.24	50.92
CDY15531	Canola	cytosol, golgi, nucleus	40.37	49.84
AT1G05020.1	Thale cress	cytosol	42.76	49.31
Bra015381.1-P	Field mustard	cytosol	41.57	49.14
Bra030600.1-P	Field mustard	cytosol, golgi, nucleus	38.65	45.12
CDX86594	Canola	cytosol, golgi, nucleus	38.65	44.77
KRH17907	Soybean	cytosol	38.91	40.14
GSMUA_Achr2P18700_001	Banana	cytosol	25.1	37.72
GSMUA_Achr7P02300_001	Banana	plastid	23.37	34.85
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	22.97	29.73
PGSC0003DMT400040963	Potato	cytosol	24.83	29.17
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	23.51	28.73
PGSC0003DMT400035762	Potato	cytosol	24.17	28.48
PGSC0003DMT400059062	Potato	cytosol	21.12	26.68
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	14.34	24.55
PGSC0003DMT400036570	Potato	cytosol	17.53	23.04
PGSC0003DMT400058608	Potato	mitochondrion	12.09	22.75
PGSC0003DMT400075923	Potato	cytosol	16.87	22.56
PGSC0003DMT400075705	Potato	mitochondrion	11.69	22.45
PGSC0003DMT400020390	Potato	cytosol	17.13	21.72
PGSC0003DMT400017184	Potato	cytosol	11.42	19.95
PGSC0003DMT400025029	Potato	nucleus	6.37	16.9

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:102588282	MapMan:22.1.6.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
ncoils:Coil	InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276
GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0ZJ21	PFAM:PF07651
EnsemblPlantsGene:PGSC0003DMG400000664	PGSC:PGSC0003DMG400000664	EnsemblPlants:PGSC0003DMT400001773	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF26
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0002965A7F	RefSeq:XP_006357992.1	SEG:seg

Description

Clathrin assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000664]

Coordinates

chr7:-:45153530..45156294

Molecular Weight (calculated)

84057.1 Da

IEP (calculated)

5.124

GRAVY (calculated)

-0.569

Length

753 amino acids

Sequence
(BLAST)

001: MPSKLKKAIA AVKDQTSISL AKVSTNTSST LEVAVLKATT HDDVPVDERY IHEVVQLVSS NKAYAGACAR AIGKRIGRTR NWIVALKSLI LVLRIFQDGD
101: PYFPREVLHA MKRGAKILNL SNFRDDSNSS PWDFTAFIRT FALYLDERLD CFLTGKLQKR CNYNDRENSN YLRSCSDNSR SRSRSRSRNR TNEAIREMKP
201: PMLLDKISYW QRLLERAIAT RPTGAAQTNC LVQAALYAVV QESFDLYKDI SDGLTLVLDS FFHLPYQTCV NAFQTCVKST KQFEEINSFY SLCKSIGVGR
301: TSEYPSVQII TDELIESLQE FLKDQSSFPV KSSGDVVLQR PGSMKSSRSR FDSYGGQSEF SLASSEPYSD RSPTMSGNGS PCSSLEDLIR ATVTGRSPSI
401: SIDLEAYSDI RFKKQFIDDI CDTGSARSLP VSMIDLVSLS EDNGNIDNEY EEVQDQKQQP VVEKAKELNS KEAKPKQEQI KDKQKPTLSS SSSKGWEDVL
501: NEALTPSSTS INAFQEQQDP KEVLRNETNV SPVKYSSSNA WDLALFEAIP QTNSVQPMPN TVANNINSYD TSTLPSFNAF QENQEPEQVS RKGANSGWDM
601: VLFETTPQTT ASQPMPTTPN NANNFNSSYL DELYNQNSST LLPISGLKPN INMNIYNQIP VMESANHYNP FLQDISTEQP ATPSTPLPTF QATPTFSGQN
701: SSSAVQNDLN SDPFGTFPSS DQMLNGAVNQ KDFSDEQQLW LQNQNKIIAK HMS

Best Arabidopsis Sequence Match ( AT1G05020.1 )
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS

Arabidopsis Description

AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.