Factsheet for VIT_12s0059g01330.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0180g00180.t01
VIT_06s0061g01170.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05020.1	VIT_03s0180g00180.t01	AT2G15270.1	21798944
AT1G05020.1	VIT_06s0061g01170.t01	AT5G22780.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18283	Canola	cytosol, nucleus, peroxisome	45.85	56.46
CDY53396	Canola	cytosol	51.95	51.6
CDY15531	Canola	cytosol, golgi, nucleus	50.08	48.52
Bra015381.1-P	Field mustard	cytosol	52.28	48.51
PGSC0003DMT400036091	Potato	cytosol	59.56	48.48
Solyc12g006000.1.1	Tomato	cytosol	59.22	48.08
AT1G05020.1	Thale cress	cytosol	52.96	47.93
Solyc07g049380.1.1	Tomato	cytosol	56.68	45.09
PGSC0003DMT400001773	Potato	nucleus	56.18	44.09
Bra030600.1-P	Field mustard	cytosol, golgi, nucleus	47.72	43.72
CDX86594	Canola	cytosol, golgi, nucleus	47.88	43.54
KRH17907	Soybean	cytosol	51.27	41.51
GSMUA_Achr2P18700_001	Banana	cytosol	34.18	40.32
GSMUA_Achr7P02300_001	Banana	plastid	31.13	36.44
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	30.96	31.44
VIT_04s0008g05540.t01	Wine grape	cytosol	33.16	29.56
VIT_11s0016g05480.t01	Wine grape	cytosol	31.3	29.23
VIT_18s0089g01330.t01	Wine grape	cytosol	17.6	25.87
VIT_11s0016g05900.t01	Wine grape	cytosol	22.17	25.79
VIT_11s0103g00620.t01	Wine grape	cytosol	23.86	23.86
VIT_11s0037g01000.t01	Wine grape	cytosol	20.47	23.73
VIT_01s0011g06370.t01	Wine grape	mitochondrion	15.23	23.38
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	22.0	22.93

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100246581	wikigene:100246581	MapMan:22.1.6.1	InterPro:ANTH_dom
ProteinID:CBI28863	ProteinID:CBI28863.3	InterPro:Clathrin_AP_dom2	UniProt:D7TEE0	InterPro:ENTH	InterPro:ENTH_VHS
EMBL:FN595765	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	EntrezGene:LOC100246581	wikigene:LOC100246581	PFAM:PF07651	PFscan:PS50942
PANTHER:PTHR22951	PANTHER:PTHR22951:SF26	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI00019846FC
ArrayExpress:VIT_12s0059g01330	EnsemblPlantsGene:VIT_12s0059g01330	EnsemblPlants:VIT_12s0059g01330.t01	RefSeq:XP_002271237	RefSeq:XP_002271237.1	SEG:seg

Description

No Description!

Coordinates

chr12:+:6270961..6272736

Molecular Weight (calculated)

65943.0 Da

IEP (calculated)

4.587

GRAVY (calculated)

-0.457

Length

591 amino acids

Sequence
(BLAST)

001: MPSKLRKAIG AVKDQTSIGI AKVSNNASSL DVAVLKTTSH DEVPLDDRYV NEVLQLISTN KAYAAACAQA IAKRIGRTRN WIVALKSLML VLRIFQDGDP
101: YFPRDVLHVM KRGARILNLT NFRDDSNSSP WDYTAFVRTF ALYLDERLDC FLTGKLQRRF ARDETEKRHG GRKLNPPVRD MKPGMLIDRI TNWQRLLDRA
201: VATRPTGPAK TNKLVQVTLY AVVQESFDLY RDISDGLALL LDSFFHLQYQ SCVNAFQACV KASKQFEELS GFYSLCKSIG VGRTSEYPSV QKISDELIET
301: LQEFLKDQAP FPSNGRAPAS HLLLPAPPKN AGASSEHGEA DQLEVSEPTE RFSGYSTSLE DLVSVVDLGM SPSIFADQEG GFEPSEKQSQ QGDFANFYDN
401: GSVPSLSVEQ RSYSAPDDLV SFYEDWPEQP KEEEKEKEKE ASSSAEADLW EIVLVETANQ VTQPSHDLSN SFQNPSPMDD FFNQTAVPDQ NTNPFLQDLD
501: ETPVIAAAAT TTSFFPMSPT FHATPTFSAQ NLNDTEVAVQ DSDDPFAAYP TAMSNEQIFN GLDNQQNVLH EQKLWLEQQN KIIAKVHSLD S

Best Arabidopsis Sequence Match ( AT1G05020.1 )
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS

Arabidopsis Description

AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.