Factsheet for Zm00001d038892_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19899	Sorghum	cytosol, mitochondrion, plastid	96.63	96.45
Os05t0549000-01	Rice	plasma membrane	90.23	89.59
TraesCS1D01G375800.1	Wheat	cytosol, mitochondrion, plastid	87.21	86.9
TraesCS1B01G388800.1	Wheat	cytosol, mitochondrion, plastid	87.03	86.88
TraesCS1A01G369700.1	Wheat	cytosol, mitochondrion, plastid	87.03	86.73
Zm00001d009452_P007	Maize	cytosol, mitochondrion, plastid	88.81	85.91
HORVU1Hr1G078340.3	Barley	plastid	86.32	76.78
GSMUA_Achr9P21890_001	Banana	cytosol	75.31	75.71
GSMUA_Achr4P13420_001	Banana	cytosol	71.23	75.09
Zm00001d043773_P003	Maize	cytosol	77.44	69.54
KRH42533	Soybean	cytosol	69.8	69.19
KRH58627	Soybean	nucleus	69.63	68.89
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	69.27	68.78
Solyc04g007860.2.1	Tomato	cytosol, plastid	67.85	67.85
PGSC0003DMT400075923	Potato	cytosol	67.85	67.85
KRH38239	Soybean	cytosol	65.36	66.43
CDY17660	Canola	cytosol	64.83	63.92
Bra024871.1-P	Field mustard	cytosol	64.83	63.92
AT2G01600.1	Thale cress	cytosol, mitochondrion	64.3	63.4
CDY36239	Canola	cytosol	64.3	63.4
CDY09433	Canola	cytosol, mitochondrion	63.94	62.39
CDY48813	Canola	cytosol	64.3	62.09
Bra017439.1-P	Field mustard	cytosol	62.52	61.65
CDY04095	Canola	cytosol	62.52	61.65
CDY17459	Canola	cytosol	62.34	61.58
Zm00001d015430_P001	Maize	cytosol	55.77	54.42
Zm00001d036672_P005	Maize	cytosol	55.06	53.91
AT1G14910.1	Thale cress	mitochondrion	61.81	50.29
Bra026647.1-P	Field mustard	cytosol	63.06	49.31
Zm00001d037484_P002	Maize	cytosol, mitochondrion	48.13	49.18
CDY53525	Canola	cytosol, mitochondrion	60.57	48.92
CDY45299	Canola	mitochondrion	59.68	48.84
Zm00001d052008_P003	Maize	cytosol	45.12	45.93
Zm00001d045154_P002	Maize	mitochondrion	48.13	45.32
Bra026179.1-P	Field mustard	cytosol, mitochondrion	59.86	43.99
Zm00001d046121_P001	Maize	cytosol	19.72	30.58
Zm00001d030399_P001	Maize	cytosol	18.65	30.0
Zm00001d047804_P001	Maize	plasma membrane	32.33	28.71
Zm00001d028620_P001	Maize	plasma membrane	31.97	28.17
Zm00001d035652_P001	Maize	cytosol	29.31	27.64
Zm00001d010228_P001	Maize	cytosol	28.24	25.85
Zm00001d012220_P001	Maize	cytosol, mitochondrion, nucleus, plastid	25.04	25.41
Zm00001d049990_P001	Maize	mitochondrion	16.7	24.23
Zm00001d005869_P001	Maize	mitochondrion	16.52	23.37
Zm00001d007272_P001	Maize	mitochondrion	13.5	19.24
Zm00001d049002_P001	Maize	mitochondrion	13.68	19.01
Zm00001d031760_P001	Maize	mitochondrion	16.16	18.5
Zm00001d047867_P001	Maize	cytosol	10.12	17.33

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100217151	MapMan:22.1.6.2	InterPro:ANTH_dom	ProteinID:AQK88189.1
UniProt:B4FLN4	EMBL:BT038022	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043
GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI00017B6B2B	EnsemblPlantsGene:Zm00001d038892	EnsemblPlants:Zm00001d038892_P001	EnsemblPlants:Zm00001d038892_T001	SEG:seg

Description

Putative clathrin assembly protein

Coordinates

chr6:-:166531936..166538352

Molecular Weight (calculated)

62470.2 Da

IEP (calculated)

4.964

GRAVY (calculated)

-0.355

Length

563 amino acids

Sequence
(BLAST)

001: MASMQSWRKA YGAIKDTTTV SLANLNSDFK DLDVAIVKAT NHVECPPKER HLRKVVAATS IARPRADVAY CIHALARRLA KTRNWIVALK ALVVIHRLLR
101: EGDPTFREEL LNFTQRGRIL QLSNFKDDSS PIAWDCSAWV RTYGLFLEER LECFRVLKYD VEAERLSKQG QGPEKGHSRT RELDSQDLLE QLPALQQLLY
201: RLVGCRPEGA ANNNYLVQYA LALVLKESFK IYCAINDGII NLVDKFFEMP RHEAHKALEI YRRAGQQAGN LSDFYENCRG LELARNFQFP TLREPPQTFL
301: ATMEEYVKEA PRMVPVREPL ELPERLLLTY KPEESEDIPE PASVEEENAP VEEPVLVPPV TEVVSPPKTE VADTGDLLGL DDPNPAVSAI EESNALALAI
401: VPTDGASTTG NTAFQDKGFD PTGWELALVT APSNTTSSAS VGQLGGGFDK LILDSLYDDG AYRQRQQQQV YGSAVPNPFM TNDPFVMSNQ VAPPPSVQMA
501: AMSQQHQQIP TMMQPNPFGP PMQPQVGMGP ATNNPFLDAG FGAFPVANNS HQQHNPFGSA QLL

Best Arabidopsis Sequence Match ( AT2G01600.1 )
(BLAST)

001: MGTLQSWRKA YGALKDSTKV GLVRVNSEYA DLDVAIVKAT NHVECPPKDR HLRKIFAATS VTRARADVAY CIHALSRRLH KTRNWTVALK TLIVIHRLLR
101: EGDPTFREEL LNFSQRGRIL QLSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRVLKYD TEAERLPKSN PGQDKGYSRT RDLDGEELLE QLPALQQLLY
201: RLIGCRPEGA ANHNHVIQYA LALVLKESFK VYCAINDGII NLIDKFFEMA KHEAITSLEI YKRAGQQARS LSDFYEACKG LELARNFQFP VLREPPQSFL
301: TTMEEYIKEA PRVVDVPAEP LLLTYRPDDG LTTEDTEPSH EEREMLPSDD VVVVSEETEP SPPPPPSANA QNFIDTDDLW GLNTGAPDTS VIEDQNALAL
401: AIVSTDADPP TPHFGQPNNY DPTGWELALV TAPSSDISAS TERKLAGGLD TLTLSSLYDD GAYIASQRPV YGAPAPNPFA SHDPFASSNG TAPPPQQQAV
501: NNPFGAYQQT YQHQPQPTYQ HQSNPPTNNS NPFGDFGEFP VNPVSQQPNT SGYGDFSVNQ HNNPFRSTGL I

Arabidopsis Description

Putative clathrin assembly protein At2g01600 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBH2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.