Factsheet for TraesCS3D01G259000.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G258900.1	Wheat	cytosol	97.34	98.03
TraesCS3B01G292000.2	Wheat	cytosol, mitochondrion, plastid	97.69	97.86
Os01t0694900-01	Rice	cytosol	84.72	83.98
EES01312	Sorghum	cytosol	80.99	80.99
TraesCS1D01G375800.1	Wheat	cytosol, mitochondrion, plastid	78.51	78.23
GSMUA_Achr4P13420_001	Banana	cytosol	69.45	73.22
GSMUA_Achr9P21890_001	Banana	cytosol	72.47	72.86
Zm00001d043773_P003	Maize	cytosol	78.15	70.18
KRH42533	Soybean	cytosol	65.9	65.32
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	65.72	65.26
KRH58627	Soybean	nucleus	65.19	64.5
PGSC0003DMT400075923	Potato	cytosol	63.94	63.94
Solyc04g007860.2.1	Tomato	cytosol, plastid	63.77	63.77
KRH38239	Soybean	cytosol	60.57	61.55
Bra024871.1-P	Field mustard	cytosol	61.46	60.6
CDY17660	Canola	cytosol	61.46	60.6
CDY36239	Canola	cytosol	61.1	60.25
AT2G01600.1	Thale cress	cytosol, mitochondrion	60.57	59.72
CDY09433	Canola	cytosol, mitochondrion	60.92	59.45
CDY48813	Canola	cytosol	61.46	59.35
CDY17459	Canola	cytosol	60.04	59.3
CDY04095	Canola	cytosol	59.86	59.02
Bra017439.1-P	Field mustard	cytosol	59.86	59.02
TraesCS7D01G414100.1	Wheat	mitochondrion	51.87	51.41
TraesCS6D01G143700.1	Wheat	cytosol	52.93	50.77
TraesCS7D01G476900.2	Wheat	cytosol	51.33	49.91
AT1G14910.1	Thale cress	mitochondrion	59.33	48.27
Bra026647.1-P	Field mustard	cytosol	60.57	47.36
CDY45299	Canola	mitochondrion	57.73	47.24
CDY53525	Canola	cytosol, mitochondrion	58.44	47.2
TraesCS7D01G140200.1	Wheat	cytosol	47.25	47.16
Bra026179.1-P	Field mustard	cytosol, mitochondrion	57.9	42.56
TraesCS6D01G354100.2	Wheat	cytosol	42.27	40.2
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	29.48	29.64
TraesCS1D01G036500.1	Wheat	cytosol	28.06	25.57
TraesCS1D01G266400.1	Wheat	mitochondrion	28.24	24.02
TraesCS4D01G085400.1	Wheat	mitochondrion	13.5	19.24
TraesCS5D01G304500.1	Wheat	mitochondrion	14.56	18.55

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:TraesCS3D01G259000	EnsemblPlants:TraesCS3D01G259000.2	TIGR:cd03564
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:360929327..360935353

Molecular Weight (calculated)

62301.0 Da

IEP (calculated)

4.907

GRAVY (calculated)

-0.321

Length

563 amino acids

Sequence
(BLAST)

001: MSALQSWRKA YGALKDTTTV SLASLNSDFK DLDVAIVKAT NHVECPPKDR HLRKIVAASS MARPQADVAY CIHALARRLT KTRSWIVALK TLVVIHRLLR
101: DGDPTFREEL LNFTQRVQIL QLSNFKDNSS PIAWDYSSWV RTYGLFLEER LQCFRILKYD IEAERLPKQG QGTEKTNFQA HSQTRELDSQ ALLEQMPALQ
201: QLLYRLIGCQ PEGAANTNYL VQYALALVLK ESFKIYCAIN DGIINLVDKF FEMPRHDALK ALEIYRRAGQ QAGNLSDFYE NCRGLELARN FQFPTLREPP
301: QTFLSTMEEY VKEAPRMVPI KDPLEFPERL LLTYKPEESE VVPEPVPVQE EVPQMEEPAP VPSLTEVASS PPNTKVADTG DLLGLSDPNP SVSAIEESNA
401: LALAIAPTGV NTSTTSTATM QDIGFDPTGW ELALVTTSSS NTNSLAVDSN LGGGFDKLTL DSLYDDGTYR QMQQQLPYGS VPHNPFMASD PFAVSNQVAS
501: PPSVQMAAMA QQPQQMQPNP FGPPSHPQPV PNPFLDAGFG PFPAANGNGM HAQANPFGTA QLL

Best Arabidopsis Sequence Match ( AT5G57200.1 )
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Arabidopsis Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.