CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047804_P001	Maize	plasma membrane	95.19	96.85
Os03t0275500-01	Rice	plasma membrane	94.73	93.86
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	80.93	93.21
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	91.32	92.32
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	90.85	91.85
Zm00001d030399_P001	Maize	cytosol	49.15	90.57
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	89.92	89.78
Zm00001d046121_P001	Maize	cytosol	50.39	89.53
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	58.76	71.92
CDX76976	Canola	cytosol	64.19	69.81
CDY35361	Canola	cytosol	63.88	69.71
CDY11530	Canola	cytosol	61.55	68.45
KRH52429	Soybean	endoplasmic reticulum	67.13	67.55
CDX68831	Canola	cytosol	61.4	67.01
CDX75232	Canola	cytosol	61.55	66.95
Bra007800.1-P	Field mustard	cytosol	63.57	66.88
PGSC0003DMT400035762	Potato	cytosol	66.05	66.67
KRH61760	Soybean	mitochondrion	67.13	66.41
Solyc08g059660.1.1	Tomato	cytosol	65.27	66.19
Bra034252.1-P	Field mustard	cytosol	65.89	65.49
PGSC0003DMT400040963	Potato	cytosol	64.81	65.21
VIT_04s0008g05540.t01	Wine grape	cytosol	66.82	65.01
AT2G25430.1	Thale cress	cytosol	65.74	64.93
CDX76977	Canola	cytosol	52.4	64.75
Bra011333.1-P	Field mustard	cytosol	62.79	64.59
Solyc06g011450.1.1	Tomato	cytosol	61.24	64.33
VIT_11s0016g05480.t01	Wine grape	cytosol	62.95	64.14
GSMUA_Achr11P...	Banana	cytosol	45.12	63.82
CDX76760	Canola	cytosol	46.2	63.81
AT4G32285.2	Thale cress	cytosol	62.64	63.62
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	59.38	62.18
Solyc07g008060.1.1	Tomato	cytosol	58.29	61.24
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	58.76	59.97
KRH20132	Soybean	cytosol	56.12	59.15
EES18894	Sorghum	cytosol	49.61	51.36
KRH05593	Soybean	cytosol	6.67	50.0
EES18258	Sorghum	cytosol	41.86	43.34
KXG33814	Sorghum	cytosol, mitochondrion	34.88	39.54
EES19899	Sorghum	cytosol, mitochondrion, plastid	28.06	32.09
KXG19435	Sorghum	cytosol, mitochondrion	27.29	31.21
EES06356	Sorghum	cytosol	27.44	31.05
KXG20534	Sorghum	cytosol, mitochondrion	27.44	30.52
KXG20765	Sorghum	mitochondrion	26.82	30.46
EES01312	Sorghum	cytosol	26.2	30.02
KXG31293	Sorghum	cytosol	25.58	30.0
EES13983	Sorghum	mitochondrion	17.05	27.36
EER96828	Sorghum	mitochondrion	15.5	24.88
EES08262	Sorghum	mitochondrion, plastid	14.73	21.74

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.4.6	EntrezGene:8081504	InterPro:ANTH_dom	UniProt:C5WPG6
InterPro:Clathrin_AP_dom2	EnsemblPlants:EER92480	ProteinID:EER92480	ProteinID:EER92480.1	InterPro:ENTH	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809
InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF13	SMART:SM00273
EnsemblPlantsGene:SORBI_3001G420700	SUPFAM:SSF48464	SUPFAM:SSF89009	unigene:Sbi.14864	UniParc:UPI0001A82CE4	RefSeq:XP_002465482.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:70172023..70175786

Molecular Weight (calculated)

71428.9 Da

IEP (calculated)

5.661

GRAVY (calculated)

-0.644

Length

645 amino acids

Sequence
(BLAST)

001: MSSSTIRKAL GAVKDQTSIG LAKVTSNIAP ELDVLIVKAT SHDDEPAEER HIREILHLTS GSRAHVAAAV AGCSRRLSRT RDYVVALKSL MLVHRLLVDG
101: DPSFHRELLH ATRRGTRLLN LSDFRDEAHS GSWDHSAFVR TYALYLDQRL EFFLHERKQG SNNGSSSSHN GPSPRDRDRW GSPDPYGRRS PSYSSPPGYG
201: GYDDYRERNG GNNDDKRPPT PVRDMKPERV LARMHHLQQL LDRFLACRPT GGAKHSRMVL VALYQIVRES FQLYADICEV LAVLLDRFFD MEYAECVKAF
301: EAYASAAKQI DELCAFYSWC KDTGVARSSE YPEVQRVTDK LLETLEEFMR DRAKRPKSPP REPEPEPVKE EPEPDMNSIK ALPAPEDYKE PEPEKVEEEV
401: KPEPPPQPQG DLVDLREDTV TADEQGNRLA LALFQGPPAA GGGNGSWEAF PSNGGNEVTS AWQNPAAEPG KADWELALVE TASNLSKQKP AMSGGMDPLL
501: LNGMYDQGVV RQHVSAQVTT GSASSVALPA PGQKTQMLAL PAPDGSMQAV GGDPFAASLA VPPPSYVQMA DLEKKQQLLT QEQVMWQQYQ RDGMQGQSSL
601: NKLDRAYNNG FAPNPAMPYG MPTAYNTNPM PMAYTGNTGY YYPTY

Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)

001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY

Arabidopsis Description

Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.