Factsheet for Solyc10g007720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054719	Potato	plastid	98.46	98.46
VIT_12s0028g00470.t01	Wine grape	plastid	75.98	77.35
GSMUA_AchrUn_...	Banana	mitochondrion	14.79	76.69
KRH14497	Soybean	plastid	73.37	74.43
KRH73654	Soybean	plastid	73.02	74.25
Bra004269.1-P	Field mustard	plastid	68.05	69.7
GSMUA_Achr3P08720_001	Banana	plastid	67.81	69.54
CDY01870	Canola	plastid	67.81	69.45
CDX96060	Canola	plastid	67.81	69.45
AT1G67930.1	Thale cress	plastid	68.05	69.11
CDY28835	Canola	cytosol, plastid	66.75	65.96
TraesCS1B01G250300.1	Wheat	plastid	61.89	63.94
TraesCS1D01G238700.1	Wheat	plastid	61.78	63.81
EES19439	Sorghum	plastid	61.78	63.74
TraesCS1A01G233600.1	Wheat	plastid	61.66	63.69
Os05t0378900-01	Rice	plastid	61.54	63.49
GSMUA_AchrUn_...	Banana	extracellular	18.22	61.35
Zm00001d038059_P001	Maize	plastid	61.42	61.13
VIT_05s0094g00690.t01	Wine grape	cytosol	8.88	56.82
HORVU1Hr1G057490.3	Barley	plastid	17.04	42.11

Protein Annotations

EnsemblPlants:Solyc10g007720.2.1	EnsemblPlantsGene:Solyc10g007720.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005829	GO:GO:0006810	GO:GO:0006891	GO:GO:0008150	GO:GO:0017119
InterPro:Cog5	PANTHER:PTHR13228	PFAM:PF10392	SEG:seg	UniParc:UPI000276B3CB	UniProt:K4CXV1
MapMan:22.6.2.5	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:1967084..1974413

Molecular Weight (calculated)

93076.1 Da

IEP (calculated)

7.212

GRAVY (calculated)

-0.126

Length

845 amino acids

Sequence
(BLAST)

001: MASPAIQRST HLSSTPVSSS SPLQRLSTFK DRSINPTPTA TVTPTPTSGL TPFTPASSPL DSFTSDPIFS SFLSSDFDST RFSSAALSSG STASRIEKLQ
101: EGLRLLDHQL RHEVLTRHHD LLNQLTSLRA AESALSTLRS SVTSLQSSLR RVRSELSDPH QVIEVKTLQL SNLHSATELL QSTIRTIRLS KKLRDLMDST
201: PDPEKLDLSK AAQLHFEILS LYNEYHLAGI DVVDLELKWV LEIGQKLRAE GMKVLEKGLE GLNQAEVGAG LQVFYNMGEL RGTVDGLVSK YKAMGVKSIT
301: TALDMKAISA GGGFGPGGVQ RSGTPQFGGS AKAKDALWQR MSGCMDQLHS IVVAVWHLQR VLSKKRDPFT HVLLLDEVMQ EGDPILTDRV WEALGKSFAN
401: QMKSTFSTSS FVKEIFTLGY PKLFSMLENL LERISRDTDV KGVPPALSSE AKDQMLSSIE IFQTAFLTLC LSRLSELVNT VFPVSGRGTV PSKDHIARII
501: SRIQEEIEAV QMDAQLTLLV LREINKVLLL LSERTEYQIS AGPEARQITG PATPAQVKNF ALCQHLQEIH TRISSMVAGL PAIATDILSP ALGSIYGVAG
601: DSVTPLFQSM LDRLESCILQ IHDQNFGSLG MDAAMDNNAS PYMEELQKSI LHFRSEFLSR LLPSSANSLT TGSETICTTL VRSMASRVLI FFIRHASLVR
701: PLSESGKLRL ARDMAELELA VGQNLFPVEQ LGAPYRALRA FRPVIFLETS QLASSPLRQD LPPSVILHHL YSRGPEELQS PLQRNRLTPM QYSLWMDSQG
801: EDQIWKGIKA TLDDYASKVR SRGDKEFSPV YPLMIEIGSS LSGNR

Best Arabidopsis Sequence Match ( AT1G67930.1 )
(BLAST)

001: MALPPSSPSP SSPSLQRLST FKNPPPSSLS SGAPPPQTPS SSSSSPLDSF ATDPILSPFL SSSFSSASFS SAALASGSPA STAERLHQAI RLLDSQLRND
101: VISRHPELLA QLSSLSHADV SLSSLRSSVS SLQSSIRRVR SDLSEPIKSI RSKSVQLSNL HTATELLSHS VRTLRLSKKL RDLADFPDPD KIDLTKAAQF
201: HFEILTMCKE YDLFGIDVID EEIKFVTEIG EKLRSEAMKV LERGMEGLNQ AEVGTGLQVF YNLGELKSTV DQLVNKYKGM AVKSVSVAMD MKAITSGSGG
301: GFGPGGIRSS GSPHIGGGAK VREALWQRMA SCMEQLCSLV VAVWHLQRVL SKKRDPFTHV LLLDEVIKEG DSMLTDRVWD ALVKAFTSQM KSAYTASSFV
401: KEIFTMGYPK LVSMIENLLE RISRDTDVKG VLPAINLERK EQMVACIAIF QTAFLSLCFG RLSDLVNSIF PMSSRGSLPS KEQISQVLSH IQDEIEAVHP
501: DARLTLLVLR EIGKALSNLA QRAECQISTG PETRQISGPA TSTQIRNFTL CQHLQGIHTH ISSMVADLPS IATDVLSPYL AAIYDAACEP VTPLFKAMRD
601: KLESCILQIH DQNFGADDAD MDNNASSYME ELQRSILHFR KEFLSRLLPS AANANTAGTE SICTRLTRQM ASRVLIFYIR HASLVRPLSE WGKLRMAKDM
701: AELELAVGQN LFPVEQLGAP YRALRAFRPL VFLETSQMGS SPLINDLPPS IVLHHLYTRG PDELESPMQK NRLSPKQYSL WLDNQREDQI WKGIKATLDD
801: YAVKIRSRGD KEFSPVYPLM LQIGSSLTQE NL

Arabidopsis Description

Golgi transport complex protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9C9V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.