CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96060	Canola	plastid	97.7	97.7
CDY28835	Canola	cytosol, plastid	93.09	89.82
AT1G67930.1	Thale cress	plastid	90.18	89.42
KRH73654	Soybean	plastid	73.09	72.56
KRH14497	Soybean	plastid	72.97	72.27
GSMUA_AchrUn_...	Banana	mitochondrion	14.06	71.17
VIT_12s0028g00470.t01	Wine grape	plastid	71.03	70.6
PGSC0003DMT400054719	Potato	plastid	69.58	67.93
Solyc10g007720.2.1	Tomato	plastid	69.45	67.81
GSMUA_Achr3P08720_001	Banana	plastid	64.97	65.05
TraesCS1A01G233600.1	Wheat	plastid	60.12	60.64
TraesCS1B01G250300.1	Wheat	plastid	60.0	60.51
Os05t0378900-01	Rice	plastid	60.0	60.44
TraesCS1D01G238700.1	Wheat	plastid	59.88	60.39
EES19439	Sorghum	plastid	59.88	60.32
GSMUA_AchrUn_...	Banana	extracellular	17.94	58.96
Zm00001d038059_P001	Maize	plastid	59.64	57.95
VIT_05s0094g00690.t01	Wine grape	cytosol	8.48	53.03
HORVU1Hr1G057490.3	Barley	plastid	17.82	42.98

Protein Annotations

EnsemblPlants:CDY01870	EnsemblPlantsGene:GSBRNA2T00113054001	GO:A0A078EIH6	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006891	GO:GO:0008150	GO:GO:0017119
InterPro:Cog5	PANTHER:PTHR13228	PFAM:PF10392	ProteinID:CDY01870	ProteinID:CDY01870.1	SEG:seg
UniParc:UPI0004EF4504	MapMan:22.6.2.5	:	:	:	:

Description

BnaC06g29100D

Coordinates

chrLK031929:-:955031..958495

Molecular Weight (calculated)

90666.2 Da

IEP (calculated)

7.842

GRAVY (calculated)

-0.148

Length

825 amino acids

Sequence
(BLAST)

001: MMAVPPPSPS SSPSLQRLST FKNPPPSGPS PPSSSSSPLD SFANDPVLAP FLSPSFSSSS FSSAALASGS PASTAERLHQ AIRLLDSQLR SDVVSRHPEL
101: LSQLSSLSHA EISLSSLRSS VSSLQSSIRR IRSDLSEPVR SIKSKSTQLS NLHSASELLS HSVRALRLSK KLRDLTDGSD PEKIDLTKAA QLHFEILTMC
201: REYDLFGIEV IDEEIKFVKE IGEKLRSEAM KVLERGVEGL NQAEVGTGLQ VFYNLGELKV TVDQVVNKYK AMAVKSVGVA MDMKAISSGP GGGGFGPGGI
301: RSSGAPHIGG GGKVREALWQ RMGSCMDQLY ALVKAVWHLQ RVLSKKRDPF THVLLLDEVI KEGDSMLTDR VWDALVKAFT SQMKSAFTAS SFVKEIFTMG
401: YPKLVSMIEN LLERIARDTD VKGVLPAVNS ERKEQMVSCI AIFQTAFLSL CFGRLSDLVN SIFPMSSRGS LPSKEQISQV LSHIQDEIEA VHPDGRLTLL
501: VLREIGKALS NLAQRAECQI STGPETRQIT GPATSTQIRN FTLCQHLQGI HTHISSMVAD LPSIAADVLS PHLGAIYAAA CEPVTPLFKA MRDQLESCIL
601: QIHDQNFGVD DAALDNNTSP YMEELQRSIL HFRREFLSRL LPSAASANTP GTESICTRLA RQMASRVLIF YIRHASLVRP LSEWGKLRMA RDMAELELAV
701: GQNLFPVEQL GAPYRALRAF RPFIFLETSE MGSSPLIQDL PPSIVLHHLY TRGPDELESP MQKNRLSAKQ YSLWLDNQKE DQIWKGIKAT LDDYAVKIRS
801: RGDKEFSPVY PLMLQIGSSL TEGNL

Best Arabidopsis Sequence Match ( AT1G67930.1 )
(BLAST)

001: MALPPSSPSP SSPSLQRLST FKNPPPSSLS SGAPPPQTPS SSSSSPLDSF ATDPILSPFL SSSFSSASFS SAALASGSPA STAERLHQAI RLLDSQLRND
101: VISRHPELLA QLSSLSHADV SLSSLRSSVS SLQSSIRRVR SDLSEPIKSI RSKSVQLSNL HTATELLSHS VRTLRLSKKL RDLADFPDPD KIDLTKAAQF
201: HFEILTMCKE YDLFGIDVID EEIKFVTEIG EKLRSEAMKV LERGMEGLNQ AEVGTGLQVF YNLGELKSTV DQLVNKYKGM AVKSVSVAMD MKAITSGSGG
301: GFGPGGIRSS GSPHIGGGAK VREALWQRMA SCMEQLCSLV VAVWHLQRVL SKKRDPFTHV LLLDEVIKEG DSMLTDRVWD ALVKAFTSQM KSAYTASSFV
401: KEIFTMGYPK LVSMIENLLE RISRDTDVKG VLPAINLERK EQMVACIAIF QTAFLSLCFG RLSDLVNSIF PMSSRGSLPS KEQISQVLSH IQDEIEAVHP
501: DARLTLLVLR EIGKALSNLA QRAECQISTG PETRQISGPA TSTQIRNFTL CQHLQGIHTH ISSMVADLPS IATDVLSPYL AAIYDAACEP VTPLFKAMRD
601: KLESCILQIH DQNFGADDAD MDNNASSYME ELQRSILHFR KEFLSRLLPS AANANTAGTE SICTRLTRQM ASRVLIFYIR HASLVRPLSE WGKLRMAKDM
701: AELELAVGQN LFPVEQLGAP YRALRAFRPL VFLETSQMGS SPLINDLPPS IVLHHLYTRG PDELESPMQK NRLSPKQYSL WLDNQREDQI WKGIKATLDD
801: YAVKIRSRGD KEFSPVYPLM LQIGSSLTQE NL

Arabidopsis Description

Golgi transport complex protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9C9V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.