CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038059_P001	Maize	plastid	97.56	94.11
TraesCS1D01G238700.1	Wheat	plastid	92.06	92.18
TraesCS1B01G250300.1	Wheat	plastid	92.06	92.18
TraesCS1A01G233600.1	Wheat	plastid	91.82	91.93
Os05t0378900-01	Rice	plastid	90.11	90.11
HORVU1Hr1G057490.3	Barley	plastid	34.07	81.58
GSMUA_AchrUn_...	Banana	mitochondrion	15.63	78.53
GSMUA_Achr3P08720_001	Banana	plastid	70.21	69.78
KRH73654	Soybean	plastid	65.69	64.74
KRH14497	Soybean	plastid	65.45	64.35
PGSC0003DMT400054719	Potato	plastid	64.1	62.13
Solyc10g007720.2.1	Tomato	plastid	63.74	61.78
CDY01870	Canola	plastid	60.32	59.88
CDX96060	Canola	plastid	60.32	59.88
Bra004269.1-P	Field mustard	plastid	60.32	59.88
GSMUA_AchrUn_...	Banana	extracellular	18.32	59.76
AT1G67930.1	Thale cress	plastid	59.46	58.53
CDY28835	Canola	cytosol, plastid	59.95	57.43
VIT_12s0028g00490.t01	Wine grape	extracellular	13.55	54.68

Protein Annotations

MapMan:22.6.2.5	EntrezGene:8077937	UniProt:C5YXB9	InterPro:Cog5	ncoils:Coil	EnsemblPlants:EES19439
ProteinID:EES19439	ProteinID:EES19439.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005829	GO:GO:0006810	GO:GO:0006891	GO:GO:0008150	GO:GO:0017119
PFAM:PF10392	PANTHER:PTHR13228	EnsemblPlantsGene:SORBI_3009G120500	unigene:Sbi.7381	UniParc:UPI0001A88A2F	RefSeq:XP_002441009.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:47074622..47079384

Molecular Weight (calculated)

89851.4 Da

IEP (calculated)

8.079

GRAVY (calculated)

-0.053

Length

819 amino acids

Sequence
(BLAST)

001: MAAPPPTTPR LLLSPTSKDL LTAASFASPP SPTSDDPASP LDAFASDPVL SAFLSPSFSP SDFSSAALSS GLAASRAEQL QDAIRLLRRH LRVEVLRRHP
101: LLLSHLLSLR SASASLSSLP SHLNLLSSHL SLLSSHLSAP RSHLAHSSAS LSSLLATADL LLHSHRLVRL SSRLLASSPA PDLARQAELY REIRLLYEEK
201: NLSGINAVDE EMRKVDAAAS KLRSEASAVI DRGASESNQN DVWCGLQVYY NLGELKTAVE GLVGKHKAAG AKSVAVALDM KAISMTAGVG GGPGGVQRSG
301: TPQIGGSKKA AEALWDRMRQ CMEELHRAVT AAWQLQTVLT KKRVPFTQML FLEEVWQEGE PLITERVWDA IVKAFASQMK STFTASSFVK EIFTLGYPRL
401: FSMVENLLER ISRDTDVKGT LPALTPEGKD HMISAIEIFQ TAFLALCHSR LSDYVNSIFP MSNRGTIPSK DQISRLVSRI QEEIEVVRTH GHLLVLVLRE
501: IGKTLLLLAQ RAEYQISTGP EARQVTGTAT AAQLKNFALC LHLQEVHMRI SSVLSTLPNV ASEVLSPSLG VVYGVACDSV TSLFQAMLDR LESCILKMHE
601: QDFSGHGMDA AMDNNASAYM EELQKCAVHF RSEFLSKLLP SSSSRSETIC TIMVRRMASR VLIFFIRHAS LVRPLSEAGK LRMARDMAEL ELAVGQNLFP
701: VEQLGAPYRA LRAFRPVLFL ETSQLEKSPL LQDLPPSVIL HHLYSRGPDE LQSPLQRNKL TPLQYSLWLD SQGEDQIWKG VKATLDDYET RVRSRGDKEF
801: SPVYPLMLQI GSALSQATT

Best Arabidopsis Sequence Match ( AT1G67930.1 )
(BLAST)

001: MALPPSSPSP SSPSLQRLST FKNPPPSSLS SGAPPPQTPS SSSSSPLDSF ATDPILSPFL SSSFSSASFS SAALASGSPA STAERLHQAI RLLDSQLRND
101: VISRHPELLA QLSSLSHADV SLSSLRSSVS SLQSSIRRVR SDLSEPIKSI RSKSVQLSNL HTATELLSHS VRTLRLSKKL RDLADFPDPD KIDLTKAAQF
201: HFEILTMCKE YDLFGIDVID EEIKFVTEIG EKLRSEAMKV LERGMEGLNQ AEVGTGLQVF YNLGELKSTV DQLVNKYKGM AVKSVSVAMD MKAITSGSGG
301: GFGPGGIRSS GSPHIGGGAK VREALWQRMA SCMEQLCSLV VAVWHLQRVL SKKRDPFTHV LLLDEVIKEG DSMLTDRVWD ALVKAFTSQM KSAYTASSFV
401: KEIFTMGYPK LVSMIENLLE RISRDTDVKG VLPAINLERK EQMVACIAIF QTAFLSLCFG RLSDLVNSIF PMSSRGSLPS KEQISQVLSH IQDEIEAVHP
501: DARLTLLVLR EIGKALSNLA QRAECQISTG PETRQISGPA TSTQIRNFTL CQHLQGIHTH ISSMVADLPS IATDVLSPYL AAIYDAACEP VTPLFKAMRD
601: KLESCILQIH DQNFGADDAD MDNNASSYME ELQRSILHFR KEFLSRLLPS AANANTAGTE SICTRLTRQM ASRVLIFYIR HASLVRPLSE WGKLRMAKDM
701: AELELAVGQN LFPVEQLGAP YRALRAFRPL VFLETSQMGS SPLINDLPPS IVLHHLYTRG PDELESPMQK NRLSPKQYSL WLDNQREDQI WKGIKATLDD
801: YAVKIRSRGD KEFSPVYPLM LQIGSSLTQE NL

Arabidopsis Description

Golgi transport complex protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9C9V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.