Factsheet for VIT_12s0028g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion	28.08	34.97
VIT_12s0028g00470.t01	Wine grape	plastid	64.04	15.66
GSMUA_Achr3P08720_001	Banana	plastid	56.16	13.84
TraesCS1A01G233600.1	Wheat	plastid	54.68	13.57
TraesCS1B01G250300.1	Wheat	plastid	54.68	13.57
EES19439	Sorghum	plastid	54.68	13.55
TraesCS1D01G238700.1	Wheat	plastid	54.19	13.45
Zm00001d038059_P001	Maize	plastid	53.69	12.84
Os05t0378900-01	Rice	plastid	50.25	12.45
VIT_05s0094g00690.t01	Wine grape	cytosol	1.48	2.27
GSMUA_AchrUn_...	Banana	extracellular	0.0	0.0
HORVU1Hr1G057490.3	Barley	plastid	0.0	0.0

Protein Annotations

ArrayExpress:VIT_12s0028g00490	EMBL:FN595235	EnsemblPlants:VIT_12s0028g00490.t01	EnsemblPlantsGene:VIT_12s0028g00490	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006891	GO:GO:0008150
GO:GO:0017119	InterPro:Cog5	PANTHER:PTHR13228	ProteinID:CCB47463	ProteinID:CCB47463.1	UniParc:UPI0002109D98
UniProt:F6H5A5	MapMan:22.6.2.5	:	:	:	:

Description

No Description!

Coordinates

chr12:+:1105749..1106661

Molecular Weight (calculated)

22521.7 Da

IEP (calculated)

7.911

GRAVY (calculated)

0.293

Length

203 amino acids

Sequence
(BLAST)

001: MVAGLPVIAT DILFPALGAI YGVACDSVTS LFQAMLDHLE SCILQIHEQN SGVLGVDAAM DNDASPYIKS CKRMETICTW LVRTMASQVL IFSIRHASLV
101: RPLLESGKLR MAREHFGAPY QALWAFWPVI FLETSQLGAS PLLQDLPPRA YFTFFSPKGQ MSCSCPCKGT NLHHYSIHCG WILKGRIKSG EVSRLLWLIC
201: CKD

Best Arabidopsis Sequence Match ( AT1G67930.1 )
(BLAST)

001: MALPPSSPSP SSPSLQRLST FKNPPPSSLS SGAPPPQTPS SSSSSPLDSF ATDPILSPFL SSSFSSASFS SAALASGSPA STAERLHQAI RLLDSQLRND
101: VISRHPELLA QLSSLSHADV SLSSLRSSVS SLQSSIRRVR SDLSEPIKSI RSKSVQLSNL HTATELLSHS VRTLRLSKKL RDLADFPDPD KIDLTKAAQF
201: HFEILTMCKE YDLFGIDVID EEIKFVTEIG EKLRSEAMKV LERGMEGLNQ AEVGTGLQVF YNLGELKSTV DQLVNKYKGM AVKSVSVAMD MKAITSGSGG
301: GFGPGGIRSS GSPHIGGGAK VREALWQRMA SCMEQLCSLV VAVWHLQRVL SKKRDPFTHV LLLDEVIKEG DSMLTDRVWD ALVKAFTSQM KSAYTASSFV
401: KEIFTMGYPK LVSMIENLLE RISRDTDVKG VLPAINLERK EQMVACIAIF QTAFLSLCFG RLSDLVNSIF PMSSRGSLPS KEQISQVLSH IQDEIEAVHP
501: DARLTLLVLR EIGKALSNLA QRAECQISTG PETRQISGPA TSTQIRNFTL CQHLQGIHTH ISSMVADLPS IATDVLSPYL AAIYDAACEP VTPLFKAMRD
601: KLESCILQIH DQNFGADDAD MDNNASSYME ELQRSILHFR KEFLSRLLPS AANANTAGTE SICTRLTRQM ASRVLIFYIR HASLVRPLSE WGKLRMAKDM
701: AELELAVGQN LFPVEQLGAP YRALRAFRPL VFLETSQMGS SPLINDLPPS IVLHHLYTRG PDELESPMQK NRLSPKQYSL WLDNQREDQI WKGIKATLDD
801: YAVKIRSRGD KEFSPVYPLM LQIGSSLTQE NL

Arabidopsis Description

Golgi transport complex protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9C9V9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.