Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96060 | Canola | plastid | 90.64 | 93.94 |
| CDY01870 | Canola | plastid | 89.82 | 93.09 |
| AT1G67930.1 | Thale cress | plastid | 85.73 | 88.1 |
| KRH73654 | Soybean | plastid | 70.06 | 72.08 |
| KRH14497 | Soybean | plastid | 70.18 | 72.03 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 13.45 | 70.55 |
| VIT_12s0028g00470.t01 | Wine grape | plastid | 68.07 | 70.12 |
| PGSC0003DMT400054719 | Potato | plastid | 66.08 | 66.86 |
| Solyc10g007720.2.1 | Tomato | plastid | 65.96 | 66.75 |
| GSMUA_Achr3P08720_001 | Banana | plastid | 62.11 | 64.44 |
| TraesCS1A01G233600.1 | Wheat | plastid | 57.66 | 60.27 |
| TraesCS1B01G250300.1 | Wheat | plastid | 57.54 | 60.15 |
| TraesCS1D01G238700.1 | Wheat | plastid | 57.43 | 60.02 |
| EES19439 | Sorghum | plastid | 57.43 | 59.95 |
| Os05t0378900-01 | Rice | plastid | 57.31 | 59.83 |
| GSMUA_AchrUn_... | Banana | extracellular | 17.19 | 58.57 |
| Zm00001d038059_P001 | Maize | plastid | 57.31 | 57.72 |
| VIT_05s0094g00690.t01 | Wine grape | cytosol | 8.07 | 52.27 |
| HORVU1Hr1G057490.3 | Barley | plastid | 16.73 | 41.81 |
Protein Annotations
| EnsemblPlants:CDY28835 | EnsemblPlantsGene:GSBRNA2T00041503001 | GO:A0A078GQN0 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006891 | GO:GO:0008150 | GO:GO:0017119 |
| InterPro:Cog5 | PANTHER:PTHR13228 | PFAM:PF10392 | ProteinID:CDY28835 | ProteinID:CDY28835.1 | SEG:seg |
| UniParc:UPI0004EF3E2E | UniProt:A0A078GQN0 | MapMan:22.6.2.5 | : | : | : |
Description
BnaC06g26230DBnaC06g26230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQN0]
Coordinates
chrLK032227:+:33674..37150
Molecular Weight (calculated)
94757.8 Da
IEP (calculated)
7.483
GRAVY (calculated)
-0.185
Length
855 amino acids
Sequence
(BLAST)
(BLAST)
001: MYLYRSDSVQ IQVFQFCFGN DHLQVEQRRA TRRKRNQNDS REMMALPPPS LQRLSTFKNP PPSSQPSSSS SPLDSFANDP TLAPFLSPSF SSSSFSSAAL
101: ASGSPASTAE RLHQAIRLLD SQLRSDVVSR HPELLSQLSS LSHAEISLSS LRSSVSSLQS SIRRIRSDLS DPVRSIRSKS VQLSNLHSAA ELLSHSVRAL
201: RLSKKLRDLT DGSDPEKIDL TKSAQLHFEI LAMCKEYDLF GIDVVDEEIE FVKEIGERLR SEAMKVLERG VEGLNQAEVG TGLQVFYNLG ELKGTVDQLV
301: NKYRGVAVKS VSVAMDMKAV SSGFGPGGIR SSGALHIGGG GKVREALWQR MGSCMDQLYS LVVAVWHLQR VLSKKRDPFT HVLLLDEVIK EGDSMLTDRV
401: WDALVKAFTS QMKSAFTASS FVKEIFTMGY PKLVSMIENL LERISGDTDV KGVLPAVDSE RKEQMVSCIA IFQTAFLSLC FGRLSDLVNS IFPMSSRGNL
501: PSKEQISQVL SHIQDEIEAV HPDGRLTLLV LREIGKALSN LAQRAECQIS TGPETRQITG PATSTQIRNF TLSQHLQGIH TYISSMVADL PSIAADVLSP
601: HLGAIYAAAC EPVTPLFKAM RDQLESCILQ IHDQNFGVDD AAALDNNSSP YMEELQRSIL HFRKEFLSRL LPSAATANAA GTESICTRLA RQMASRVLIF
701: YIRHASLVRP LSEWGKLRMA RDMAELELAV GQNLFPVEQL GAPYRALRAF RPLVFLETSE MGSSPLIQDL PPSIVLHHLY TRGPDELESP MQKNRLSPKQ
801: YSLWLDSQKE DQIWKGVKAT LDDYAVKIRS RGEKEFSPVY PLMLQIGSSL TQDNV
101: ASGSPASTAE RLHQAIRLLD SQLRSDVVSR HPELLSQLSS LSHAEISLSS LRSSVSSLQS SIRRIRSDLS DPVRSIRSKS VQLSNLHSAA ELLSHSVRAL
201: RLSKKLRDLT DGSDPEKIDL TKSAQLHFEI LAMCKEYDLF GIDVVDEEIE FVKEIGERLR SEAMKVLERG VEGLNQAEVG TGLQVFYNLG ELKGTVDQLV
301: NKYRGVAVKS VSVAMDMKAV SSGFGPGGIR SSGALHIGGG GKVREALWQR MGSCMDQLYS LVVAVWHLQR VLSKKRDPFT HVLLLDEVIK EGDSMLTDRV
401: WDALVKAFTS QMKSAFTASS FVKEIFTMGY PKLVSMIENL LERISGDTDV KGVLPAVDSE RKEQMVSCIA IFQTAFLSLC FGRLSDLVNS IFPMSSRGNL
501: PSKEQISQVL SHIQDEIEAV HPDGRLTLLV LREIGKALSN LAQRAECQIS TGPETRQITG PATSTQIRNF TLSQHLQGIH TYISSMVADL PSIAADVLSP
601: HLGAIYAAAC EPVTPLFKAM RDQLESCILQ IHDQNFGVDD AAALDNNSSP YMEELQRSIL HFRKEFLSRL LPSAATANAA GTESICTRLA RQMASRVLIF
701: YIRHASLVRP LSEWGKLRMA RDMAELELAV GQNLFPVEQL GAPYRALRAF RPLVFLETSE MGSSPLIQDL PPSIVLHHLY TRGPDELESP MQKNRLSPKQ
801: YSLWLDSQKE DQIWKGVKAT LDDYAVKIRS RGEKEFSPVY PLMLQIGSSL TQDNV
001: MALPPSSPSP SSPSLQRLST FKNPPPSSLS SGAPPPQTPS SSSSSPLDSF ATDPILSPFL SSSFSSASFS SAALASGSPA STAERLHQAI RLLDSQLRND
101: VISRHPELLA QLSSLSHADV SLSSLRSSVS SLQSSIRRVR SDLSEPIKSI RSKSVQLSNL HTATELLSHS VRTLRLSKKL RDLADFPDPD KIDLTKAAQF
201: HFEILTMCKE YDLFGIDVID EEIKFVTEIG EKLRSEAMKV LERGMEGLNQ AEVGTGLQVF YNLGELKSTV DQLVNKYKGM AVKSVSVAMD MKAITSGSGG
301: GFGPGGIRSS GSPHIGGGAK VREALWQRMA SCMEQLCSLV VAVWHLQRVL SKKRDPFTHV LLLDEVIKEG DSMLTDRVWD ALVKAFTSQM KSAYTASSFV
401: KEIFTMGYPK LVSMIENLLE RISRDTDVKG VLPAINLERK EQMVACIAIF QTAFLSLCFG RLSDLVNSIF PMSSRGSLPS KEQISQVLSH IQDEIEAVHP
501: DARLTLLVLR EIGKALSNLA QRAECQISTG PETRQISGPA TSTQIRNFTL CQHLQGIHTH ISSMVADLPS IATDVLSPYL AAIYDAACEP VTPLFKAMRD
601: KLESCILQIH DQNFGADDAD MDNNASSYME ELQRSILHFR KEFLSRLLPS AANANTAGTE SICTRLTRQM ASRVLIFYIR HASLVRPLSE WGKLRMAKDM
701: AELELAVGQN LFPVEQLGAP YRALRAFRPL VFLETSQMGS SPLINDLPPS IVLHHLYTRG PDELESPMQK NRLSPKQYSL WLDNQREDQI WKGIKATLDD
801: YAVKIRSRGD KEFSPVYPLM LQIGSSLTQE NL
101: VISRHPELLA QLSSLSHADV SLSSLRSSVS SLQSSIRRVR SDLSEPIKSI RSKSVQLSNL HTATELLSHS VRTLRLSKKL RDLADFPDPD KIDLTKAAQF
201: HFEILTMCKE YDLFGIDVID EEIKFVTEIG EKLRSEAMKV LERGMEGLNQ AEVGTGLQVF YNLGELKSTV DQLVNKYKGM AVKSVSVAMD MKAITSGSGG
301: GFGPGGIRSS GSPHIGGGAK VREALWQRMA SCMEQLCSLV VAVWHLQRVL SKKRDPFTHV LLLDEVIKEG DSMLTDRVWD ALVKAFTSQM KSAYTASSFV
401: KEIFTMGYPK LVSMIENLLE RISRDTDVKG VLPAINLERK EQMVACIAIF QTAFLSLCFG RLSDLVNSIF PMSSRGSLPS KEQISQVLSH IQDEIEAVHP
501: DARLTLLVLR EIGKALSNLA QRAECQISTG PETRQISGPA TSTQIRNFTL CQHLQGIHTH ISSMVADLPS IATDVLSPYL AAIYDAACEP VTPLFKAMRD
601: KLESCILQIH DQNFGADDAD MDNNASSYME ELQRSILHFR KEFLSRLLPS AANANTAGTE SICTRLTRQM ASRVLIFYIR HASLVRPLSE WGKLRMAKDM
701: AELELAVGQN LFPVEQLGAP YRALRAFRPL VFLETSQMGS SPLINDLPPS IVLHHLYTRG PDELESPMQK NRLSPKQYSL WLDNQREDQI WKGIKATLDD
801: YAVKIRSRGD KEFSPVYPLM LQIGSSLTQE NL
Arabidopsis Description
Golgi transport complex protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9C9V9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.