Factsheet for Solyc09g005560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077751	Potato	nucleus	86.35	84.9
KRH49393	Soybean	nucleus	64.51	64.95
VIT_08s0105g00400.t01	Wine grape	nucleus	60.07	63.54
KRH65719	Soybean	cytosol	59.04	63.37
KRH00261	Soybean	nucleus	62.8	63.01
KRH75965	Soybean	nucleus	57.34	61.76
AT2G38250.1	Thale cress	nucleus	52.22	52.94
Bra005127.1-P	Field mustard	nucleus	50.85	51.03
CDX74901	Canola	nucleus	50.51	50.17
CDY14474	Canola	nucleus	49.15	49.32
CDX91438	Canola	nucleus	48.81	48.97
Bra005688.1-P	Field mustard	nucleus	47.78	48.95
Bra000046.1-P	Field mustard	nucleus	48.81	48.64
CDY07745	Canola	nucleus	48.46	48.3
CDY11203	Canola	nucleus	50.17	46.08
Bra028899.1-P	Field mustard	nucleus	38.23	45.71
CDY10496	Canola	nucleus	49.15	45.43
AT5G01380.1	Thale cress	nucleus	49.49	44.89
CDX80775	Canola	nucleus	48.81	44.83
CDY04841	Canola	nucleus	46.42	43.87
Solyc08g005900.2.1	Tomato	nucleus	38.91	34.97
GSMUA_Achr8P21100_001	Banana	nucleus	23.89	34.31
TraesCS1D01G072600.1	Wheat	nucleus	34.13	31.35
Os05t0128000-00	Rice	nucleus	35.49	31.23
Zm00001d035457_P001	Maize	nucleus	34.81	30.45
TraesCS1B01G088500.1	Wheat	nucleus	33.45	30.43
HORVU1Hr1G014950.2	Barley	mitochondrion	34.47	28.61
OQU77323	Sorghum	nucleus	34.13	23.47
Solyc12g077540.1.1	Tomato	nucleus	14.68	14.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	ncoils:Coil	GO:GO:0000981	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR017877	UniProt:K4CQ46	InterPro:Myb-like_dom
PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	EnsemblPlantsGene:Solyc09g005560.2	EnsemblPlants:Solyc09g005560.2.1	InterPro:Trihelix_TF_GT3
UniParc:UPI000276B122	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:-:386228..387708

Molecular Weight (calculated)

34427.9 Da

IEP (calculated)

7.694

GRAVY (calculated)

-1.092

Length

293 amino acids

Sequence
(BLAST)

001: MDPHLHHHQH HLQQQQHQFS HQSVNIDTTS GGVNIGGGGG DRFPQWSIQE TRDFLMIRAE LDQTFMETKR NKLLWEVIAT KMKEKGYNRS PEQCKCKWKN
101: LVTRYKGCET VEPEALRQQF PFYNELQAIF GARMQRMLWI EAEGGVGGGA SGSKKKAISS DEEEENDDSD GEKVGKKKRK VKGSMMVGSS SGNNNNNNLV
201: SSLKEILDDF MKQQMVMEMQ WLKAYEAKEE ERRIKEMEWR QTMEALENER LMMETRWRER EEQRRMREEA RAEKRDALIT TLLNKLRRED HNM

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.