CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005127.1-P	Field mustard	nucleus	96.27	97.26
CDX91438	Canola	nucleus	93.22	94.18
CDY14474	Canola	nucleus	84.07	84.93
CDY07745	Canola	nucleus	82.37	82.65
AT2G38250.1	Thale cress	nucleus	77.63	79.24
KRH65719	Soybean	cytosol	48.14	52.01
KRH75965	Soybean	nucleus	47.8	51.84
VIT_08s0105g00400.t01	Wine grape	nucleus	48.47	51.62
PGSC0003DMT400077751	Potato	nucleus	51.53	51.01
KRH49393	Soybean	nucleus	50.17	50.86
KRH00261	Soybean	nucleus	50.17	50.68
Solyc09g005560.2.1	Tomato	nucleus	50.17	50.51
CDY11203	Canola	nucleus	47.46	43.89
CDX80775	Canola	nucleus	47.12	43.57
CDY10496	Canola	nucleus	46.1	42.9
CDY04841	Canola	nucleus	44.07	41.94
GSMUA_Achr8P21100_001	Banana	nucleus	26.44	38.24
TraesCS1D01G072600.1	Wheat	nucleus	37.63	34.8
TraesCS1B01G088500.1	Wheat	nucleus	36.61	33.54
Os05t0128000-00	Rice	nucleus	34.92	30.93
HORVU1Hr1G014950.2	Barley	mitochondrion	36.61	30.59
Zm00001d035457_P001	Maize	nucleus	34.24	30.15
OQU77323	Sorghum	nucleus	35.59	24.65
CDX99735	Canola	nucleus	22.03	16.29
CDY40984	Canola	nucleus	21.36	16.03
CDY20323	Canola	cytosol	4.41	14.94
CDY26652	Canola	cytosol	19.66	14.83
CDX98101	Canola	nucleus	20.0	14.79
CDY30031	Canola	nucleus	19.66	14.54
CDY16091	Canola	nucleus	19.32	14.14
CDX97872	Canola	cytosol	3.73	12.64

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	GO:A0A078CCT5	EnsemblPlants:CDX74901	ProteinID:CDX74901	ProteinID:CDX74901.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00116900001
InterPro:IPR017877	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	InterPro:SANT/Myb
SMART:SM00717	InterPro:Trihelix_TF_GT3	UniParc:UPI0004EE3D96	SEG:seg	:	:

Description

BnaA05g06470D

Coordinates

chrLK031802:-:1335281..1336700

Molecular Weight (calculated)

34987.2 Da

IEP (calculated)

7.025

GRAVY (calculated)

-1.259

Length

295 amino acids

Sequence
(BLAST)

001: MDQHQLHQLH YLNKHHHQLH PQSQTPELAS PATGDRFPQW SLEETKELIA IRGELDQTFM ETKRNKLLWE VVSNKMRDKN FLRSPEQCKC KWKNLVTRFK
101: GCETMDEEIA RQQFPFYDDM QIIFASRMQR MLWAESEGGG GGGGTSGATR KRSHSEQFSS DEEEENVNEE LVGISNESKT LNPRKNIAKK RKGGISNSGG
201: GANNSVREVL DEFMRHQMRM ENEWRERWEA REKERAEKEE EWRRKMEELE KERMAMEQMW RDREEQRRSR EDMRAEKRDS LINSLLAKLT RDGSL

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.