Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026903.1-P | Field mustard | nucleus | 97.02 | 97.26 |
| CDY26652 | Canola | cytosol | 92.56 | 95.4 |
| CDX98101 | Canola | nucleus | 81.89 | 82.71 |
| CDY30031 | Canola | nucleus | 81.39 | 82.21 |
| AT1G13450.1 | Thale cress | nucleus | 79.9 | 79.31 |
| KRH31419 | Soybean | nucleus | 65.51 | 70.59 |
| KRG97471 | Soybean | nucleus | 65.51 | 70.21 |
| VIT_01s0010g02420.t01 | Wine grape | nucleus | 64.02 | 69.73 |
| CDY40984 | Canola | nucleus | 64.02 | 65.65 |
| CDX99735 | Canola | nucleus | 63.77 | 64.41 |
| CDX97872 | Canola | cytosol | 13.65 | 63.22 |
| Solyc12g077540.1.1 | Tomato | nucleus | 45.66 | 61.13 |
| TraesCS2D01G343200.1 | Wheat | nucleus | 40.2 | 55.67 |
| HORVU2Hr1G046270.1 | Barley | cytosol | 21.09 | 54.14 |
| TraesCS2B01G363200.2 | Wheat | nucleus | 48.14 | 53.74 |
| HORVU2Hr1G084030.2 | Barley | cytosol | 47.89 | 53.46 |
| TraesCS2A01G320100.1 | Wheat | nucleus | 46.9 | 52.35 |
| EES11021 | Sorghum | nucleus | 47.39 | 50.0 |
| Zm00001d025720_P002 | Maize | nucleus | 46.9 | 49.87 |
| GSMUA_Achr5P17240_001 | Banana | nucleus | 25.06 | 46.33 |
| CDY20323 | Canola | cytosol | 9.43 | 43.68 |
| CDY14474 | Canola | nucleus | 14.64 | 20.21 |
| CDX91438 | Canola | nucleus | 14.39 | 19.86 |
| CDX74901 | Canola | nucleus | 14.14 | 19.32 |
| CDY07745 | Canola | nucleus | 13.9 | 19.05 |
| CDY10496 | Canola | nucleus | 14.14 | 17.98 |
| CDY11203 | Canola | nucleus | 14.14 | 17.87 |
| CDX80775 | Canola | nucleus | 14.14 | 17.87 |
| CDY04841 | Canola | nucleus | 13.65 | 17.74 |
Protein Annotations
| EnsemblPlants:CDY16091 | EnsemblPlantsGene:GSBRNA2T00090501001 | Gene3D:1.10.10.60 | GO:A0A078FSM7 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| InterPro:SANT/Myb | PANTHER:PTHR45169 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:CDY16091 | ProteinID:CDY16091.1 |
| SEG:seg | SMART:SM00717 | UniParc:UPI0004EF0406 | UniProt:A0A078FSM7 | MapMan:15.5.20 | : |
Description
BnaC08g40320DBnaC08g40320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSM7]
Coordinates
chrLK032060:-:558491..560757
Molecular Weight (calculated)
46305.4 Da
IEP (calculated)
7.499
GRAVY (calculated)
-0.809
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MFVSDKPRPI DFYKDDNTTT ARDNMIIDVP TNAPGRDLHP HHNHHHHLQP QQILLGESSG EDHEVKAPKK RAETWVQDET RSLIMFRRGM DGLFNTSKSN
101: KHLWEQISAK MREKGFDRSP TMCTDKWRNL LKEFKKAKHR DRGNRSAKMS YYKEIEEILR ERSKKVTATG QYSKSPNATP TAKVDSFMQF TDKGFDDPSI
201: SFGSVEANGR PALNLERRLD HDGHPLAIAT VDVVAANGVP PWNWRETPGN GNFFIYVIQT GGDSHGQPFG GRVITVKFGD YTRRIGVDGS TEAIKDTIRS
301: AFGLRTRRAF WLEDEDQVVR CLDRDMPLGN YLLHVDDGLA IRVCHYDESN QLPVHTEEKV FYTEEDYRDF LARRGWTCLQ FDGFRNIDNM DDLQPGAVYR
401: GVR
101: KHLWEQISAK MREKGFDRSP TMCTDKWRNL LKEFKKAKHR DRGNRSAKMS YYKEIEEILR ERSKKVTATG QYSKSPNATP TAKVDSFMQF TDKGFDDPSI
201: SFGSVEANGR PALNLERRLD HDGHPLAIAT VDVVAANGVP PWNWRETPGN GNFFIYVIQT GGDSHGQPFG GRVITVKFGD YTRRIGVDGS TEAIKDTIRS
301: AFGLRTRRAF WLEDEDQVVR CLDRDMPLGN YLLHVDDGLA IRVCHYDESN QLPVHTEEKV FYTEEDYRDF LARRGWTCLQ FDGFRNIDNM DDLQPGAVYR
401: GVR
001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR
Arabidopsis Description
GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.