CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40984	Canola	nucleus	90.98	92.37
CDX97872	Canola	cytosol	19.3	88.51
AT3G25990.1	Thale cress	cytosol	66.17	70.97
CDY20323	Canola	cytosol	14.29	65.52
CDY26652	Canola	cytosol	63.41	64.71
CDY30031	Canola	nucleus	64.41	64.41
CDY16091	Canola	nucleus	64.41	63.77
CDX98101	Canola	nucleus	63.16	63.16
HORVU2Hr1G046270.1	Barley	cytosol	21.8	55.41
TraesCS2A01G320100.1	Wheat	nucleus	49.62	54.85
TraesCS2D01G343200.1	Wheat	nucleus	39.6	54.3
TraesCS2B01G363200.2	Wheat	nucleus	47.87	52.91
HORVU2Hr1G084030.2	Barley	cytosol	46.87	51.8
Zm00001d025720_P002	Maize	nucleus	46.62	49.08
EES11021	Sorghum	nucleus	46.87	48.95
GSMUA_Achr5P17240_001	Banana	nucleus	22.81	41.74
CDY14474	Canola	nucleus	16.54	22.6
CDX91438	Canola	nucleus	16.54	22.6
CDY07745	Canola	nucleus	16.54	22.45
CDX74901	Canola	nucleus	16.29	22.03
CDY10496	Canola	nucleus	14.79	18.61
CDY04841	Canola	nucleus	14.04	18.06
CDY11203	Canola	nucleus	13.78	17.24
CDX80775	Canola	nucleus	13.53	16.93

Protein Annotations

EnsemblPlants:CDX99735	EnsemblPlantsGene:GSBRNA2T00108360001	Gene3D:1.10.10.60	GO:A0A078ECC9	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	InterPro:SANT/Myb
PANTHER:PTHR45169	PFAM:PF13837	PFscan:PS50090	ProteinID:CDX99735	ProteinID:CDX99735.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EEA61C	MapMan:15.5.20	:	:

Description

BnaC02g35850D

Coordinates

chrLK031913:+:563776..565558

Molecular Weight (calculated)

45861.6 Da

IEP (calculated)

6.208

GRAVY (calculated)

-0.871

Length

399 amino acids

Sequence
(BLAST)

001: MFVSSEKPRS PIDFYKDDDD NNNPSSPTSR DINMMIDGDL QPPPHHQHQH QHQILLGDNS SSEDHEINNK APKKRAETWV QDETRILIAL RREMDGLFNT
101: SKSNKHLWEE ISSKMREKGF DRSPAMCTDK WRNLLKEFKK AAKDQQVSGK MSHYKEIEDL LRERSKKVAT SYKSVTAPSK VDSFMQFTDK GFEDTGISFA
201: SVEANGRPTL NLERQLDHDG HPLAIASADV VTANGVPPWN WREPAGNGKS SDGQPFVGKI ITVKYGDYTR RVGIDGTAEA IKEAIRSAFR FRTRRAFWLE
301: DEEQVVRSLD RDMPLGNYTL HVDEGIAVRV CHYDESDPLP VHQEEKVFYT EEDYREFLGR RGWTCLREFD GGFRNIESMV RNVDSMDDLQ PGVLYRGMR

Best Arabidopsis Sequence Match ( AT3G25990.1 )
(BLAST)

001: MFVSDNNNPS RDINMMIGDV TSNGDLQPHQ IILGESSGGE DHEIIKAPKK RAETWAQDET RTLISLRREM DNLFNTSKSN KHLWEQISKK MREKGFDRSP
101: SMCTDKWRNI LKEFKKAKQH EDKATSGGST KMSYYNEIED IFRERKKKVA FYKSPATTTP SSAKVDSFMQ FTDKGFEDTG ISFTSVEANG RPTLNLETEL
201: DHDGLPLPIA ADPITANGVP PWNWRDTPGN GVDGQPFAGR IITVKFGDYT RRVGIDGTAE AIKEAIRSAF RLRTRRAFWL EDEEQVIRSL DRDMPLGNYI
301: LRIDEGIAVR VCHYDESDPL PVHQEEKIFY TEEDYRDFLA RRGWTCLREF DAFQNIDNMD ELQSGRLYRG MR

Arabidopsis Description

GT-4Trihelix transcription factor GT-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.