Factsheet for VIT_05s0094g00940.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0051g00850.t01	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43810.1	VIT_05s0051g00850.t01	AT5G48870.1	23221597
AT2G43810.1	VIT_05s0051g00850.t01	AT5G48870.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021589	Potato	nucleus	95.6	95.6
KRH40501	Soybean	nucleus	93.41	93.41
KRH00694	Soybean	cytosol	93.41	93.41
AT2G43810.1	Thale cress	cytosol	86.81	86.81
Solyc10g078450.1.1	Tomato	cytosol	41.76	86.36
Bra003391.1-P	Field mustard	cytosol	83.52	83.52
CDX67814	Canola	cytosol	83.52	83.52
CDX98396	Canola	cytosol	83.52	83.52
CDX89036	Canola	cytosol, extracellular, nucleus	79.12	82.76
Bra014525.1-P	Field mustard	cytosol	82.42	81.52
CDY45780	Canola	cytosol, extracellular, nucleus	82.42	81.52
Bra007478.1-P	Field mustard	cytosol	82.42	80.65
CDY05977	Canola	cytosol	82.42	80.65
Zm00001d025239_P001	Maize	nucleus	83.52	80.0
EES12036	Sorghum	plastid	84.62	79.38
GSMUA_Achr6P11930_001	Banana	cytosol	82.42	77.32
Os02t0510100-01	Rice	cytosol, nucleus, plastid	85.71	77.23
TraesCS2A01G284300.1	Wheat	nucleus	82.42	75.76
TraesCS2B01G301300.1	Wheat	plastid	82.42	75.76
TraesCS2D01G283200.1	Wheat	plastid	82.42	75.76
KXG30274	Sorghum	plastid	80.22	75.26
Os04t0388900-01	Rice	nucleus	80.22	75.26
GSMUA_Achr8P16430_001	Banana	plastid	80.22	56.59
HORVU2Hr1G070000.3	Barley	plastid	81.32	53.62
VIT_00s0220g00030.t01	Wine grape	cytosol	29.67	30.68

Protein Annotations

EntrezGene:100259432	wikigene:100259432	MapMan:16.4.3.6	Gene3D:2.30.30.100	ProteinID:CBI24712	ProteinID:CBI24712.3
UniProt:D7T2I1	EMBL:FN595507	GO:GO:0000398	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0005688	GO:GO:0005730	GO:GO:0005732	GO:GO:0005737	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0030490
GO:GO:0030529	GO:GO:0046540	EntrezGene:LOC100259432	wikigene:LOC100259432	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf
InterPro:Lsm6/sSmF	PFAM:PF01423	PIRSF:PIRSF006609	PANTHER:PTHR11021	SMART:SM00651	SUPFAM:SSF50182
TIGR:TC60684	UniParc:UPI0001983521	ArrayExpress:VIT_05s0094g00940	EnsemblPlantsGene:VIT_05s0094g00940	EnsemblPlants:VIT_05s0094g00940.t01	unigene:Vvi.15091
RefSeq:XP_002278412	RefSeq:XP_002278412.1	:	:	:	:

Description

No Description!

Coordinates

chr5:+:24270147..24276761

Molecular Weight (calculated)

9852.8 Da

IEP (calculated)

9.452

GRAVY (calculated)

-0.356

Length

91 amino acids

Sequence
(BLAST)

1: MSTGGEKGSA TTKTPADFLK SIRGRPVVVK LNSGVDYRGI LACLDGYMNI AMEQTEEYVN GQLKNKYGDA FIRGNNVLYI STSKRTLAEG A

Best Arabidopsis Sequence Match ( AT2G43810.1 )
(BLAST)

1: MSGVGEKASG TTKTPADFLK SIRGKPVVVK LNSGVDYRGI LTCLDGYMNI AMEQTEEYVN GQLKNTYGDA FVRGNNVLYI STTKGTLSDG A

Arabidopsis Description

LSM6BSm-like protein LSM36B [Source:UniProtKB/Swiss-Prot;Acc:O22823]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.