Factsheet for VIT_05s0051g00850.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0064g01230.t01	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48870.1	VIT_13s0064g01230.t01	AT2G03870.2	23221597
AT5G48870.1	VIT_13s0064g01230.t01	AT2G03870.2	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00430_001	Banana	cytosol	95.4	95.4
Solyc09g091500.2.1	Tomato	nucleus	95.4	94.32
PGSC0003DMT400076269	Potato	mitochondrion	95.4	94.32
KRH58439	Soybean	cytosol	93.1	93.1
AT5G48870.1	Thale cress	cytosol	89.66	88.64
Zm00001d038088_P001	Maize	cytosol, extracellular, nucleus	89.66	88.64
Zm00001d010461_P001	Maize	cytosol, extracellular, nucleus	89.66	88.64
EES19467	Sorghum	cytosol, extracellular, nucleus	89.66	88.64
TraesCS1D01G242900.1	Wheat	cytosol, extracellular, nucleus	89.66	87.64
TraesCS1B01G254400.1	Wheat	cytosol, extracellular, nucleus	89.66	87.64
Os05t0389300-01	Rice	cytosol, extracellular, nucleus	89.66	87.64
TraesCS1A01G242900.1	Wheat	cytosol, extracellular, nucleus	88.51	87.5
Bra036157.1-P	Field mustard	cytosol	87.36	85.39
Bra020674.1-P	Field mustard	cytosol	86.21	84.27
CDY33941	Canola	cytosol	86.21	84.27
CDY19934	Canola	cytosol	86.21	84.27
CDY05658	Canola	cytosol	86.21	84.27
CDY00041	Canola	cytosol	86.21	84.27
KRH42315	Soybean	cytosol, extracellular, plasma membrane	86.21	74.26
HORVU1Hr1G056490.1	Barley	plastid	89.66	55.32

Protein Annotations

EntrezGene:100264807	wikigene:100264807	MapMan:16.4.3.5	Gene3D:2.30.30.100	ProteinID:CBI33362	ProteinID:CBI33362.3
UniProt:D7TS90	EMBL:FN596241	GO:GO:0000398	GO:GO:0000956	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005688	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0030529	GO:GO:0046540	GO:GO:1990726	EntrezGene:LOC100264807	wikigene:LOC100264807	InterPro:LSM_dom_euk/arc
InterPro:LSM_dom_sf	InterPro:LSm5	PFAM:PF01423	PANTHER:PTHR20971	SMART:SM00651	SUPFAM:SSF50182
TIGR:TC61890	TIGR:TC63563	UniParc:UPI00015C7DB3	ArrayExpress:VIT_05s0051g00850	EnsemblPlantsGene:VIT_05s0051g00850	EnsemblPlants:VIT_05s0051g00850.t01
unigene:Vvi.4165	RefSeq:XP_002285668	RefSeq:XP_002285668.1	RefSeq:XP_003632024	RefSeq:XP_003632024.1	:

Description

No Description!

Coordinates

chr5:+:11954471..11969217

Molecular Weight (calculated)

9618.7 Da

IEP (calculated)

4.241

GRAVY (calculated)

-0.068

Length

87 amino acids

Sequence
(BLAST)

1: MSTNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGTLRGFD VYVNMVLEDV TEYEITSEGR RITKLDQILL NGNNIAILVP GGSPDPE

Best Arabidopsis Sequence Match ( AT5G48870.1 )
(BLAST)

1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE

Arabidopsis Description

LSM5SAD1 [Source:UniProtKB/TrEMBL;Acc:A0A178USD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.