Factsheet for VIT_13s0064g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g00230.t01	cytosol, nucleus
VIT_14s0060g02240.t01	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03870.2	VIT_07s0005g00230.t01	AT5G27720.1	23221597
AT2G03870.2	VIT_14s0060g02240.t01	AT5G27720.1	23221597
AT2G03870.2	VIT_07s0005g00230.t01	AT5G27720.1	23221597
AT2G03870.2	VIT_14s0060g02240.t01	AT5G27720.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58808	Soybean	cytosol, extracellular, nucleus	88.78	95.96
KRH42700	Soybean	cytosol, extracellular, nucleus	87.85	94.95
KRH27506	Soybean	cytosol	85.98	94.85
Solyc09g009640.2.1	Tomato	extracellular, nucleus	83.18	89.9
PGSC0003DMT400006953	Potato	mitochondrion	83.18	89.9
AT2G03870.2	Thale cress	cytosol	82.24	88.89
GSMUA_Achr10P...	Banana	cytosol	85.98	85.98
EES12932	Sorghum	cytosol	76.64	83.67
Zm00001d002155_P001	Maize	cytosol	75.7	82.65
TraesCS2A01G528800.1	Wheat	cytosol, nucleus, plastid	75.7	81.0
TraesCS2B01G559200.1	Wheat	cytosol, nucleus, plastid	75.7	81.0
TraesCS2D01G531700.1	Wheat	cytosol, nucleus, plastid	75.7	81.0
Os08t0177700-01	Rice	plasma membrane	79.44	78.7
TraesCS7A01G368900.1	Wheat	cytosol	73.83	75.96
GSMUA_Achr7P02070_001	Banana	extracellular	39.25	73.68
CDY45725	Canola	cytosol	82.24	73.33
TraesCS7B01G259600.1	Wheat	cytosol	65.42	67.31
TraesCSU01G104500.2	Wheat	plastid	76.64	55.78
CDY49697	Canola	mitochondrion	81.31	53.37
Zm00001d026392_P002	Maize	mitochondrion	72.9	53.06
TraesCS1D01G062600.1	Wheat	cytosol, nucleus, plastid	46.73	51.55
Bra025138.1-P	Field mustard	golgi	81.31	35.22
VIT_08s0007g03130.t01	Wine grape	cytosol	26.17	35.0
CDX83524	Canola	golgi	82.24	34.38
CDY48065	Canola	golgi	81.31	25.97

Protein Annotations

EntrezGene:100855332	wikigene:100855332	MapMan:16.4.3.7	Gene3D:2.30.30.100	ProteinID:CBI24863	ProteinID:CBI24863.3
UniProt:D7T2Y2	EMBL:FN595509	GO:GO:0000398	GO:GO:0000956	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005688	GO:GO:0005689	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0030529	GO:GO:0071004	GO:GO:0071013	GO:GO:0097526
GO:GO:1990726	EntrezGene:LOC100855332	wikigene:LOC100855332	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm7
PFAM:PF01423	PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF5	SMART:SM00651	SUPFAM:SSF50182
UniParc:UPI0001BE28DC	ArrayExpress:VIT_13s0064g01230	EnsemblPlantsGene:VIT_13s0064g01230	EnsemblPlants:VIT_13s0064g01230.t01	RefSeq:XP_003633551	RefSeq:XP_003633551.1
RefSeq:XP_003633552	RefSeq:XP_003633552.1	RefSeq:XP_003633553	RefSeq:XP_003633553.1	RefSeq:XP_003633554	RefSeq:XP_003633554.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:-:23106000..23111181

Molecular Weight (calculated)

11831.2 Da

IEP (calculated)

4.462

GRAVY (calculated)

-0.269

Length

107 amino acids

Sequence
(BLAST)

001: MWCYETLFQS GRKETVLDLA KFVDKGVQVK LTGGRQVTGT LKGYDQLLNL VLDEAVEFLR DPDDPQKTTD QTRRLGLIVC RGTAVMLVSP TDGTDEIANP
101: FIQPDGA

Best Arabidopsis Sequence Match ( AT2G03870.1 )
(BLAST)

1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV

Arabidopsis Description

LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.