Factsheet for PGSC0003DMT400006953

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400019498	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03870.2	PGSC0003DMT400019498	AT5G27720.1	23221597
AT2G03870.2	PGSC0003DMT400019498	AT5G27720.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g009640.2.1	Tomato	extracellular, nucleus	100.0	100.0
KRH27506	Soybean	cytosol	90.91	92.78
KRH42700	Soybean	cytosol, extracellular, nucleus	90.91	90.91
KRH58808	Soybean	cytosol, extracellular, nucleus	90.91	90.91
AT2G03870.2	Thale cress	cytosol	85.86	85.86
VIT_13s0064g01230.t01	Wine grape	cytosol	89.9	83.18
EES12932	Sorghum	cytosol	80.81	81.63
GSMUA_Achr10P...	Banana	cytosol	87.88	81.31
Zm00001d002155_P001	Maize	cytosol	79.8	80.61
TraesCS2A01G528800.1	Wheat	cytosol, nucleus, plastid	79.8	79.0
TraesCS2D01G531700.1	Wheat	cytosol, nucleus, plastid	79.8	79.0
TraesCS2B01G559200.1	Wheat	cytosol, nucleus, plastid	79.8	79.0
Os08t0177700-01	Rice	plasma membrane	82.83	75.93
TraesCS7A01G368900.1	Wheat	cytosol	77.78	74.04
CDY45725	Canola	cytosol	86.87	71.67
GSMUA_Achr7P02070_001	Banana	extracellular	38.38	66.67
TraesCS7B01G259600.1	Wheat	cytosol	69.7	66.35
TraesCS1D01G062600.1	Wheat	cytosol, nucleus, plastid	51.52	52.58
TraesCSU01G104500.2	Wheat	plastid	77.78	52.38
CDY49697	Canola	mitochondrion	85.86	52.15
Zm00001d026392_P002	Maize	mitochondrion	75.76	51.02
PGSC0003DMT400060122	Potato	cytosol	30.3	37.5
PGSC0003DMT400061605	Potato	cytosol	28.28	34.57
Bra025138.1-P	Field mustard	golgi	82.83	33.2
CDX83524	Canola	golgi	82.83	32.03
CDY48065	Canola	golgi	82.83	24.48

Protein Annotations

EntrezGene:102580345	MapMan:16.4.3.7	Gene3D:2.30.30.100	GO:GO:0000398	GO:GO:0000956	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0030529	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm7	UniProt:M0ZS84
PFAM:PF01423	EnsemblPlantsGene:PGSC0003DMG400002694	PGSC:PGSC0003DMG400002694	EnsemblPlants:PGSC0003DMT400006953	PIRSF:PIRSF037188	PANTHER:PTHR10553
PANTHER:PTHR10553:SF5	SMART:SM00651	SUPFAM:SSF50182	UniParc:UPI000276C6DF	RefSeq:XP_006341127.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400002694]

Coordinates

chr9:-:3047354..3051190

Molecular Weight (calculated)

10650.8 Da

IEP (calculated)

4.784

GRAVY (calculated)

-0.184

Length

99 amino acids

Sequence
(BLAST)

1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVV GTLKGYDQLL NLVLDEAVEH LRDADDPLKT TDQKRSLGLI VCRGTAVMLV APTDGTDEIS NPFVQPDGA

Best Arabidopsis Sequence Match ( AT2G03870.1 )
(BLAST)

1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV

Arabidopsis Description

LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.