Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29444 | Canola | cytosol | 37.11 | 47.37 |
| AT5G27720.1 | Thale cress | cytosol | 56.7 | 42.64 |
| Bra009946.1-P | Field mustard | cytosol | 55.67 | 41.86 |
| Bra036615.1-P | Field mustard | cytosol | 55.67 | 41.86 |
| TraesCS3D01G181600.1 | Wheat | cytosol | 54.64 | 37.06 |
| TraesCS3B01G205600.2 | Wheat | cytosol | 54.64 | 37.06 |
| TraesCS3A01G175900.1 | Wheat | cytosol | 54.64 | 37.06 |
| VIT_14s0060g02240.t01 | Wine grape | cytosol, extracellular, nucleus | 56.7 | 36.91 |
| Os01t0256900-01 | Rice | nucleus | 55.67 | 36.73 |
| EES02709 | Sorghum | nucleus | 54.64 | 36.55 |
| Solyc01g099740.2.1 | Tomato | cytosol | 54.64 | 35.1 |
| GSMUA_Achr1P13020_001 | Banana | extracellular | 55.67 | 34.84 |
| KRG96430 | Soybean | cytosol | 54.64 | 32.12 |
| GSMUA_Achr2P06970_001 | Banana | extracellular | 55.67 | 31.76 |
| Zm00001d040294_P002 | Maize | cytosol, mitochondrion | 54.64 | 29.78 |
| Solyc09g065940.2.1 | Tomato | nucleus | 41.24 | 29.41 |
| VIT_07s0005g00230.t01 | Wine grape | golgi | 55.67 | 27.55 |
Protein Annotations
| Gene3D:2.30.30.100 | MapMan:35.1 | ncoils:Coil | GO:GO:0000398 | GO:GO:0000956 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | InterPro:LSm4/Sm_D1/D3 | InterPro:Lsm4 | UniProt:M1AC65 | PFAM:PF01423 | EnsemblPlantsGene:PGSC0003DMG400007541 |
| PGSC:PGSC0003DMG400007541 | EnsemblPlants:PGSC0003DMT400019498 | PANTHER:PTHR23338 | PANTHER:PTHR23338:SF28 | SUPFAM:SSF50182 | UniParc:UPI000295860A |
Description
Small nuclear ribonucleoprotein SM D3 [Source:PGSC_GENE;Acc:PGSC0003DMG400007541]
Coordinates
chr9:+:48976581..48977667
Molecular Weight (calculated)
11237.6 Da
IEP (calculated)
5.148
GRAVY (calculated)
-0.301
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: METDNGHLVN CDTWMKIHLR EVICTSKDGD RFWRMPECYI RGNTIKYLRV LDELICGVWV YVAKLTMTCL DSELENIENR VEKLKEVSAV PSNNAGN
001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
Arabidopsis Description
LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.