Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
19621931
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G181600.1 | Wheat | cytosol | 94.56 | 97.2 |
| TraesCS3B01G205600.2 | Wheat | cytosol | 94.56 | 97.2 |
| TraesCS3A01G175900.1 | Wheat | cytosol | 94.56 | 97.2 |
| EES02709 | Sorghum | nucleus | 93.2 | 94.48 |
| AT5G27720.1 | Thale cress | cytosol | 76.19 | 86.82 |
| Bra009946.1-P | Field mustard | cytosol | 74.83 | 85.27 |
| Bra036615.1-P | Field mustard | cytosol | 74.83 | 85.27 |
| KRH68174 | Soybean | nucleus | 85.71 | 85.14 |
| GSMUA_Achr1P13020_001 | Banana | extracellular | 89.12 | 84.52 |
| VIT_14s0060g02240.t01 | Wine grape | cytosol, extracellular, nucleus | 85.03 | 83.89 |
| CDY19734 | Canola | cytosol, mitochondrion | 74.83 | 82.71 |
| Solyc01g099740.2.1 | Tomato | cytosol | 82.99 | 80.79 |
| CDX86143 | Canola | extracellular | 74.15 | 78.99 |
| CDX80625 | Canola | extracellular | 74.15 | 78.99 |
| Zm00001d040294_P002 | Maize | cytosol, mitochondrion | 93.88 | 77.53 |
| Solyc09g065940.2.1 | Tomato | nucleus | 70.75 | 76.47 |
| CDX99972 | Canola | cytosol | 72.11 | 75.71 |
| GSMUA_Achr2P06970_001 | Banana | extracellular | 84.35 | 72.94 |
| VIT_07s0005g00230.t01 | Wine grape | golgi | 86.39 | 64.8 |
| PGSC0003DMT400019498 | Potato | cytosol | 36.73 | 55.67 |
Protein Annotations
| MapMan:16.4.3.4 | Gene3D:2.30.30.100 | EntrezGene:4326227 | EMBL:AK100819 | ProteinID:BAB07978.1 | ProteinID:BAE95809.1 |
| ProteinID:BAF04543.1 | ProteinID:BAS71397.1 | ProteinID:EEE54265.1 | GO:GO:0000245 | GO:GO:0000387 | GO:GO:0000398 |
| GO:GO:0000932 | GO:GO:0000956 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005688 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0017070 | GO:GO:0033962 |
| GO:GO:0097526 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:LSm4/Sm_D1/D3 | InterPro:Lsm4 | EnsemblPlantsGene:Os01g0256900 |
| EnsemblPlants:Os01t0256900-01 | PFAM:PF01423 | PANTHER:PTHR23338 | PANTHER:PTHR23338:SF28 | UniProt:Q9LGE6 | SMART:SM00651 |
| SUPFAM:SSF50182 | UniParc:UPI000012E966 | RefSeq:XP_015623140.1 | SEG:seg | : | : |
Description
Similar to SmX6 protein. (Os01t0256900-01)
Coordinates
chr1:-:8570880..8574555
Molecular Weight (calculated)
15728.9 Da
IEP (calculated)
10.638
GRAVY (calculated)
-0.850
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DKFWRMPECY IRGNTIKYLR VPDEVIDKVQ EETSKSRSDR RPPGVGRGRG
101: RGDIGTKPGG RGIGRGQDDG GSKGGGGRGR GGIGGKGGIK GGGRGRG
101: RGDIGTKPGG RGIGRGQDDG GSKGGGGRGR GGIGGKGGIK GGGRGRG
001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
Arabidopsis Description
LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.