Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036615.1-P | Field mustard | cytosol | 96.99 | 100.0 |
| AT5G27720.1 | Thale cress | cytosol | 93.23 | 96.12 |
| CDX86143 | Canola | extracellular | 96.99 | 93.48 |
| CDX80625 | Canola | extracellular | 95.49 | 92.03 |
| CDX99972 | Canola | cytosol | 84.96 | 80.71 |
| KRH71562 | Soybean | nucleus | 85.71 | 76.51 |
| EES02709 | Sorghum | nucleus | 82.71 | 75.86 |
| KRH31884 | Soybean | nucleus | 84.96 | 75.84 |
| VIT_14s0060g02240.t01 | Wine grape | cytosol, extracellular, nucleus | 84.96 | 75.84 |
| TraesCS3A01G175900.1 | Wheat | cytosol | 81.2 | 75.52 |
| TraesCS3B01G205600.2 | Wheat | cytosol | 81.2 | 75.52 |
| TraesCS3D01G181600.1 | Wheat | cytosol | 81.2 | 75.52 |
| Os01t0256900-01 | Rice | nucleus | 82.71 | 74.83 |
| Solyc01g099740.2.1 | Tomato | cytosol | 84.21 | 74.17 |
| GSMUA_Achr1P13020_001 | Banana | extracellular | 84.21 | 72.26 |
| Solyc09g065940.2.1 | Tomato | nucleus | 70.68 | 69.12 |
| GSMUA_Achr2P06970_001 | Banana | extracellular | 80.45 | 62.94 |
| Zm00001d040294_P002 | Maize | cytosol, mitochondrion | 83.46 | 62.36 |
| VIT_07s0005g00230.t01 | Wine grape | golgi | 87.97 | 59.69 |
| CDY29444 | Canola | cytosol | 29.32 | 51.32 |
Protein Annotations
| MapMan:16.4.3.4 | Gene3D:2.30.30.100 | GO:A0A078G2T5 | UniProt:A0A078G2T5 | EnsemblPlants:CDY19734 | ProteinID:CDY19734 |
| ProteinID:CDY19734.1 | GO:GO:0000398 | GO:GO:0000956 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00009470001 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:LSm4/Sm_D1/D3 | InterPro:Lsm4 |
| PFAM:PF01423 | PANTHER:PTHR23338 | PANTHER:PTHR23338:SF28 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI0004EE94EE |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g03870DBnaA09g03870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2T5]
Coordinates
chrLK032100:+:129245..131580
Molecular Weight (calculated)
14882.1 Da
IEP (calculated)
10.459
GRAVY (calculated)
-0.816
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEKMLPLSL LKTAQGHPML VELKNGETYN GHLVNCDTWM NIHLREVICT SKDGDRFWRM PECYIRGNTI KYLRVPDEVI DKVQEEKTRT DRKPPGVGRG
101: RGRGMDDGGA RGRGRGAPMA KMSGNRGAGR GRG
101: RGRGMDDGGA RGRGRGAPMA KMSGNRGAGR GRG
001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
Arabidopsis Description
LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.