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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • mitochondrion 1
  • cytosol 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra009946.1-P Field mustard cytosol 92.75 99.22
CDY19734 Canola cytosol, mitochondrion 93.48 96.99
AT5G27720.1 Thale cress cytosol 89.13 95.35
CDX80625 Canola extracellular 94.2 94.2
CDX99972 Canola cytosol 81.16 80.0
KRH71562 Soybean nucleus 81.88 75.84
EES02709 Sorghum nucleus 78.99 75.17
KRH31884 Soybean nucleus 81.16 75.17
VIT_14s0060g02240.t01 Wine grape cytosol, extracellular, nucleus 81.16 75.17
TraesCS3A01G175900.1 Wheat cytosol 77.54 74.83
TraesCS3B01G205600.2 Wheat cytosol 77.54 74.83
TraesCS3D01G181600.1 Wheat cytosol 77.54 74.83
Os01t0256900-01 Rice nucleus 78.99 74.15
Solyc01g099740.2.1 Tomato cytosol 80.43 73.51
GSMUA_Achr1P13020_001 Banana extracellular 81.88 72.9
Solyc09g065940.2.1 Tomato nucleus 67.39 68.38
GSMUA_Achr2P06970_001 Banana extracellular 78.99 64.12
Zm00001d040294_P002 Maize cytosol, mitochondrion 79.71 61.8
VIT_07s0005g00230.t01 Wine grape golgi 83.33 58.67
CDY29444 Canola cytosol 28.26 51.32
Protein Annotations
MapMan:16.4.3.4Gene3D:2.30.30.100GO:A0A078DFR2EnsemblPlants:CDX86143ProteinID:CDX86143ProteinID:CDX86143.1
GO:GO:0000398GO:GO:0000956GO:GO:0006139GO:GO:0006396GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00144199001InterPro:LSM_dom_euk/arcInterPro:LSM_dom_sfInterPro:LSm4/Sm_D1/D3
InterPro:Lsm4PFAM:PF01423PANTHER:PTHR23338PANTHER:PTHR23338:SF28SMART:SM00651SUPFAM:SSF50182
SignalP:SignalP-noTMUniParc:UPI0004EDD140SEG:seg:::
Description
BnaA06g28600D
Coordinates
chrLK031845:-:29447..31138
Molecular Weight (calculated)
15353.7 Da
IEP (calculated)
10.611
GRAVY (calculated)
-0.725
Length
138 amino acids
Sequence
(BLAST)
001: MVPSKSLTLF LPLSLLKTAQ GHPMLVELKN GETYNGHLVN CDTWMNIHLR EVICTSKDGD RFWRMPECYI RGNTIKYLRV PDEVIDKVQE EKTRTDRKPP
101: GVGRGRGRGM DDGGARGRGR GAPMAKMSGN RGAGRGRG
Best Arabidopsis Sequence Match ( AT5G27720.1 )
(BLAST)
001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
Arabidopsis Description
LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.