CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71562	Soybean	nucleus	96.64	96.64
KRH68174	Soybean	nucleus	92.62	93.24
AT5G27720.1	Thale cress	cytosol	76.51	88.37
Bra009946.1-P	Field mustard	cytosol	75.84	87.6
Bra036615.1-P	Field mustard	cytosol	75.84	87.6
Solyc01g099740.2.1	Tomato	cytosol	86.58	85.43
CDY19734	Canola	cytosol, mitochondrion	75.84	84.96
CDX80625	Canola	extracellular	75.17	81.16
CDX86143	Canola	extracellular	75.17	81.16
Solyc09g065940.2.1	Tomato	nucleus	73.15	80.15
CDX99972	Canola	cytosol	75.17	80.0
KRG96430	Soybean	cytosol	57.72	52.12

Protein Annotations

EntrezGene:100500134	MapMan:16.4.3.4	Gene3D:2.30.30.100	UniProt:A0A0R4J488	EMBL:ACUP02006088	EnsemblPlantsGene:GLYMA_10G019100
GO:GO:0000398	GO:GO:0000956	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0030529
EnsemblPlants:KRH31884	ProteinID:KRH31884	ProteinID:KRH31884.1	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:LSm4/Sm_D1/D3
InterPro:Lsm4	PFAM:PF01423	PANTHER:PTHR23338	PANTHER:PTHR23338:SF28	SMART:SM00651	SUPFAM:SSF50182
UniParc:UPI0001890C50	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:1652905..1655407

Molecular Weight (calculated)

16142.4 Da

IEP (calculated)

10.690

GRAVY (calculated)

-1.032

Length

149 amino acids

Sequence
(BLAST)

001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EETKSRTDRK PPGVGRGRGR
101: GREDGPGGRQ PKGIGRGLDE GGPKGQGGRG RGGPGGKPGG NRGGGRGRG

Best Arabidopsis Sequence Match ( AT5G27720.1 )
(BLAST)

001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG

Arabidopsis Description

LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.