Factsheet for Solyc09g065940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099740.2.1	Tomato	cytosol	89.71	80.79
VIT_14s0060g02240.t01	Wine grape	cytosol, extracellular, nucleus	80.15	73.15
KRH31884	Soybean	nucleus	80.15	73.15
Bra009946.1-P	Field mustard	cytosol	69.12	72.87
Bra036615.1-P	Field mustard	cytosol	69.12	72.87
KRH71562	Soybean	nucleus	79.41	72.48
EES02709	Sorghum	nucleus	77.21	72.41
AT5G27720.1	Thale cress	cytosol	68.38	72.09
TraesCS3D01G181600.1	Wheat	cytosol	75.0	71.33
TraesCS3A01G175900.1	Wheat	cytosol	75.0	71.33
TraesCS3B01G205600.2	Wheat	cytosol	75.0	71.33
Os01t0256900-01	Rice	nucleus	76.47	70.75
CDY19734	Canola	cytosol, mitochondrion	69.12	70.68
GSMUA_Achr1P13020_001	Banana	extracellular	77.94	68.39
CDX86143	Canola	extracellular	68.38	67.39
CDX80625	Canola	extracellular	67.65	66.67
CDX99972	Canola	cytosol	67.65	65.71
Zm00001d040294_P002	Maize	cytosol, mitochondrion	77.94	59.55
GSMUA_Achr2P06970_001	Banana	extracellular	73.53	58.82
VIT_07s0005g00230.t01	Wine grape	golgi	80.15	55.61
PGSC0003DMT400019498	Potato	cytosol	29.41	41.24

Protein Annotations

Gene3D:2.30.30.100	MapMan:35.1	GO:GO:0000245	GO:GO:0000387	GO:GO:0000398	GO:GO:0000932
GO:GO:0000956	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005688	GO:GO:0005737	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0017070	GO:GO:0030529	GO:GO:0033962	GO:GO:0097526	UniProt:K4CUM0	InterPro:LSM_dom_euk/arc
InterPro:LSM_dom_sf	InterPro:LSm4/Sm_D1/D3	InterPro:Lsm4	PANTHER:PTHR23338	PANTHER:PTHR23338:SF28	SMART:SM00651
SUPFAM:SSF50182	EnsemblPlantsGene:Solyc09g065940.2	EnsemblPlants:Solyc09g065940.2.1	UniParc:UPI000276CB3D	SEG:seg	:

Description

No Description!

Coordinates

chr9:-:64220910..64224629

Molecular Weight (calculated)

14456.4 Da

IEP (calculated)

10.928

GRAVY (calculated)

-0.821

Length

136 amino acids

Sequence
(BLAST)

001: MLPLSLLKTA QGHPMLVELK NGHLVNCDTW IFVKLSDGDR FWRMPECYIR GNTIKYLRVP DEVIDKVQEE TKSRGDRKPP GVGGRGRGRG GSRDEGAAGR
101: QAKGIGRGME DAGAKGRGKG GPGAKSGGKG GGRGRG

Best Arabidopsis Sequence Match ( AT5G27720.1 )
(BLAST)

001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG

Arabidopsis Description

LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.