Factsheet for VIT_07s0005g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 3
mitochondrion 2
golgi 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g02240.t01	Wine grape	cytosol, extracellular, nucleus	71.94	94.63
KRH68174	Soybean	nucleus	70.41	93.24
AT5G27720.1	Thale cress	cytosol	59.18	89.92
Bra009946.1-P	Field mustard	cytosol	58.67	89.15
Bra036615.1-P	Field mustard	cytosol	58.67	89.15
CDY19734	Canola	cytosol, mitochondrion	59.69	87.97
TraesCS3A01G175900.1	Wheat	cytosol	63.27	86.71
TraesCS3B01G205600.2	Wheat	cytosol	63.27	86.71
TraesCS3D01G181600.1	Wheat	cytosol	63.27	86.71
GSMUA_Achr1P13020_001	Banana	extracellular	68.37	86.45
Os01t0256900-01	Rice	nucleus	64.8	86.39
EES02709	Sorghum	nucleus	63.78	86.21
Solyc01g099740.2.1	Tomato	cytosol	65.31	84.77
CDX86143	Canola	extracellular	58.67	83.33
CDX80625	Canola	extracellular	58.67	83.33
CDX99972	Canola	cytosol	58.16	81.43
Solyc09g065940.2.1	Tomato	nucleus	55.61	80.15
GSMUA_Achr2P06970_001	Banana	extracellular	66.84	77.06
Zm00001d040294_P002	Maize	cytosol, mitochondrion	64.8	71.35
PGSC0003DMT400019498	Potato	cytosol	27.55	55.67

Protein Annotations

EntrezGene:100241738	wikigene:100241738	MapMan:16.4.3.4	Gene3D:2.30.30.100	ProteinID:CBI36838	ProteinID:CBI36838.3
UniProt:D7U272	EMBL:FN596502	GO:GO:0000245	GO:GO:0000387	GO:GO:0000398	GO:GO:0000932
GO:GO:0000956	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005688	GO:GO:0005737	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0017070	GO:GO:0030529	GO:GO:0033962	GO:GO:0097526	EntrezGene:LOC100241738	wikigene:LOC100241738
InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:LSm4/Sm_D1/D3	InterPro:Lsm4	PFAM:PF01423	PANTHER:PTHR23338
PANTHER:PTHR23338:SF28	SMART:SM00651	SUPFAM:SSF50182	SignalP:SignalP-noTM	UniParc:UPI0001BE4A92	ArrayExpress:VIT_07s0005g00230
EnsemblPlantsGene:VIT_07s0005g00230	EnsemblPlants:VIT_07s0005g00230.t01	unigene:Vvi.8921	RefSeq:XP_002264738	RefSeq:XP_002264738.1	SEG:seg

Description

No Description!

Coordinates

chr7:+:3007804..3011559

Molecular Weight (calculated)

21370.8 Da

IEP (calculated)

10.507

GRAVY (calculated)

-0.580

Length

196 amino acids

Sequence
(BLAST)

001: MKINACGGRS FERRCFLFWF CVWLHPFFST PISPQAGCSA FCALVKMLPL SLLKTAQGHP MLVELKNGET YNGHLVNCDT WMNIHLREVI CTSKDGDRFW
101: RMPECYIRGN TIKYLRVPDE VIDKVQEETK NRADRKPPGV GRGRGRGRED GSSGRPAKGI GRGLDDGGAR GMGGGRGRGG PGGKTGGSRG GGRGRG

Best Arabidopsis Sequence Match ( AT5G27720.1 )
(BLAST)

001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG

Arabidopsis Description

LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.