Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH68174 | Soybean | nucleus | 90.6 | 91.22 |
| Bra009946.1-P | Field mustard | cytosol | 75.84 | 87.6 |
| Bra036615.1-P | Field mustard | cytosol | 75.84 | 87.6 |
| AT5G27720.1 | Thale cress | cytosol | 75.84 | 87.6 |
| TraesCS3D01G181600.1 | Wheat | cytosol | 81.88 | 85.31 |
| TraesCS3B01G205600.2 | Wheat | cytosol | 81.88 | 85.31 |
| TraesCS3A01G175900.1 | Wheat | cytosol | 81.88 | 85.31 |
| Os01t0256900-01 | Rice | nucleus | 83.89 | 85.03 |
| CDY19734 | Canola | cytosol, mitochondrion | 75.84 | 84.96 |
| GSMUA_Achr1P13020_001 | Banana | extracellular | 87.92 | 84.52 |
| EES02709 | Sorghum | nucleus | 81.88 | 84.14 |
| Solyc01g099740.2.1 | Tomato | cytosol | 85.23 | 84.11 |
| CDX80625 | Canola | extracellular | 75.17 | 81.16 |
| CDX86143 | Canola | extracellular | 75.17 | 81.16 |
| Solyc09g065940.2.1 | Tomato | nucleus | 73.15 | 80.15 |
| CDX99972 | Canola | cytosol | 73.15 | 77.86 |
| GSMUA_Achr2P06970_001 | Banana | extracellular | 83.89 | 73.53 |
| VIT_07s0005g00230.t01 | Wine grape | golgi | 94.63 | 71.94 |
| Zm00001d040294_P002 | Maize | cytosol, mitochondrion | 83.22 | 69.66 |
| PGSC0003DMT400019498 | Potato | cytosol | 36.91 | 56.7 |
Protein Annotations
| EntrezGene:100242667 | wikigene:100242667 | MapMan:16.4.3.4 | Gene3D:2.30.30.100 | ProteinID:CCB61858 | ProteinID:CCB61858.1 |
| UniProt:F6I4M1 | EMBL:FN596746 | GO:GO:0000245 | GO:GO:0000387 | GO:GO:0000398 | GO:GO:0000932 |
| GO:GO:0000956 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005688 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0017070 | GO:GO:0030529 | GO:GO:0033962 | GO:GO:0097526 | EntrezGene:LOC100242667 | wikigene:LOC100242667 |
| InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:LSm4/Sm_D1/D3 | InterPro:Lsm4 | PFAM:PF01423 | PANTHER:PTHR23338 |
| PANTHER:PTHR23338:SF28 | SMART:SM00651 | SUPFAM:SSF50182 | TIGR:TC64520 | TIGR:TC65908 | UniParc:UPI00019849BB |
| ArrayExpress:VIT_14s0060g02240 | EnsemblPlantsGene:VIT_14s0060g02240 | EnsemblPlants:VIT_14s0060g02240.t01 | unigene:Vvi.9171 | RefSeq:XP_002283804 | RefSeq:XP_002283804.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr14:+:1805727..1811583
Molecular Weight (calculated)
16038.3 Da
IEP (calculated)
10.750
GRAVY (calculated)
-0.892
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EETKNRADRK PPGVGRGRGR
101: GREEGAGGRP AKGIGRGIDE GAKGMGGGRG RGGPGGRSGG SRGGGRGRG
101: GREEGAGGRP AKGIGRGIDE GAKGMGGGRG RGGPGGRSGG SRGGGRGRG
001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
Arabidopsis Description
LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.