Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009946.1-P | Field mustard | cytosol | 92.03 | 98.45 |
| AT5G27720.1 | Thale cress | cytosol | 89.86 | 96.12 |
| CDY19734 | Canola | cytosol, mitochondrion | 92.03 | 95.49 |
| CDX86143 | Canola | extracellular | 94.2 | 94.2 |
| CDX99972 | Canola | cytosol | 80.43 | 79.29 |
| KRH71562 | Soybean | nucleus | 81.88 | 75.84 |
| EES02709 | Sorghum | nucleus | 78.99 | 75.17 |
| KRH31884 | Soybean | nucleus | 81.16 | 75.17 |
| VIT_14s0060g02240.t01 | Wine grape | cytosol, extracellular, nucleus | 81.16 | 75.17 |
| TraesCS3A01G175900.1 | Wheat | cytosol | 77.54 | 74.83 |
| TraesCS3B01G205600.2 | Wheat | cytosol | 77.54 | 74.83 |
| TraesCS3D01G181600.1 | Wheat | cytosol | 77.54 | 74.83 |
| Os01t0256900-01 | Rice | nucleus | 78.99 | 74.15 |
| GSMUA_Achr1P13020_001 | Banana | extracellular | 81.88 | 72.9 |
| Solyc01g099740.2.1 | Tomato | cytosol | 79.71 | 72.85 |
| Solyc09g065940.2.1 | Tomato | nucleus | 66.67 | 67.65 |
| GSMUA_Achr2P06970_001 | Banana | extracellular | 79.71 | 64.71 |
| Zm00001d040294_P002 | Maize | cytosol, mitochondrion | 79.71 | 61.8 |
| VIT_07s0005g00230.t01 | Wine grape | golgi | 83.33 | 58.67 |
| CDY29444 | Canola | cytosol | 28.26 | 51.32 |
Protein Annotations
| MapMan:16.4.3.4 | Gene3D:2.30.30.100 | GO:A0A078CUY3 | EnsemblPlants:CDX80625 | ProteinID:CDX80625 | ProteinID:CDX80625.1 |
| GO:GO:0000398 | GO:GO:0000956 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0030529 |
| EnsemblPlantsGene:GSBRNA2T00133761001 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:LSm4/Sm_D1/D3 | InterPro:Lsm4 | PFAM:PF01423 |
| PANTHER:PTHR23338 | PANTHER:PTHR23338:SF28 | SMART:SM00651 | SUPFAM:SSF50182 | SignalP:SignalP-noTM | UniParc:UPI0004EDCC4F |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g28190D
Coordinates
chrLK031821:-:1724684..1726372
Molecular Weight (calculated)
15474.8 Da
IEP (calculated)
10.503
GRAVY (calculated)
-0.698
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLYNIFKLF LPLSLLKTAQ GHPMLVELKN GETYNGHLVN CDTWMNIHLR EVICTSKDGD RFWRMPECYI RGNTIKYLRV PDEVIDKVQE EKTRTDRKPP
101: GVGRGRGRGV DDGGARGRGR GAPMAKMSGN RGAGRGRG
101: GVGRGRGRGV DDGGARGRGR GAPMAKMSGN RGAGRGRG
001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
Arabidopsis Description
LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.