Factsheet for Zm00001d040294_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02709	Sorghum	nucleus	80.9	99.31
TraesCS3D01G181600.1	Wheat	cytosol	76.97	95.8
TraesCS3B01G205600.2	Wheat	cytosol	76.97	95.8
TraesCS3A01G175900.1	Wheat	cytosol	76.97	95.8
Os01t0256900-01	Rice	nucleus	77.53	93.88
AT5G27720.1	Thale cress	cytosol	63.48	87.6
Bra009946.1-P	Field mustard	cytosol	62.36	86.05
Bra036615.1-P	Field mustard	cytosol	62.36	86.05
KRH68174	Soybean	nucleus	71.35	85.81
CDY19734	Canola	cytosol, mitochondrion	62.36	83.46
VIT_14s0060g02240.t01	Wine grape	cytosol, extracellular, nucleus	69.66	83.22
GSMUA_Achr1P13020_001	Banana	extracellular	71.91	82.58
Solyc01g099740.2.1	Tomato	cytosol	69.1	81.46
CDX86143	Canola	extracellular	61.8	79.71
CDX80625	Canola	extracellular	61.8	79.71
Solyc09g065940.2.1	Tomato	nucleus	59.55	77.94
CDX99972	Canola	cytosol	61.24	77.86
GSMUA_Achr2P06970_001	Banana	extracellular	69.1	72.35
VIT_07s0005g00230.t01	Wine grape	golgi	71.35	64.8
PGSC0003DMT400019498	Potato	cytosol	29.78	54.64

Protein Annotations

EntrezGene:100384520	MapMan:16.4.3.4	Gene3D:2.30.30.100	UniProt:A0A1D6MPT6	GO:GO:0000398	GO:GO:0000956
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0030529	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf
InterPro:LSm4/Sm_D1/D3	InterPro:Lsm4	ProteinID:ONM31040.1	PFAM:PF01423	PANTHER:PTHR23338	PANTHER:PTHR23338:SF28
SMART:SM00651	SUPFAM:SSF50182	UniParc:UPI000843E554	EnsemblPlantsGene:Zm00001d040294	EnsemblPlants:Zm00001d040294_P002	EnsemblPlants:Zm00001d040294_T002
SEG:seg	:	:	:	:	:

Description

Sm-like protein LSM4

Coordinates

chr3:-:36194870..36199305

Molecular Weight (calculated)

19231.0 Da

IEP (calculated)

10.332

GRAVY (calculated)

-0.683

Length

178 amino acids

Sequence
(BLAST)

001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DKFWRMPECY IRGNTIKYLR VPDEVIDKVQ EETSKSRSDR KPPGVGRGRG
101: RGDVGAKPGG RGIGRGQDDG GRGSGGRGRG GVGAKGGNKG THFVTTYIYL QSHPIVSRDT TNLWDALLVS AGGGRGRG

Best Arabidopsis Sequence Match ( AT5G27720.1 )
(BLAST)

001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG

Arabidopsis Description

LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.