CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31884	Soybean	nucleus	93.24	92.62
KRH71562	Soybean	nucleus	91.89	91.28
VIT_14s0060g02240.t01	Wine grape	cytosol, extracellular, nucleus	91.22	90.6
TraesCS3A01G175900.1	Wheat	cytosol	84.46	87.41
TraesCS3B01G205600.2	Wheat	cytosol	84.46	87.41
TraesCS3D01G181600.1	Wheat	cytosol	84.46	87.41
EES02709	Sorghum	nucleus	85.14	86.9
Os01t0256900-01	Rice	nucleus	85.14	85.71
GSMUA_Achr1P13020_001	Banana	extracellular	87.16	83.23
GSMUA_Achr2P06970_001	Banana	extracellular	85.14	74.12
Zm00001d040294_P002	Maize	cytosol, mitochondrion	85.81	71.35
VIT_07s0005g00230.t01	Wine grape	golgi	93.24	70.41
KRG96430	Soybean	cytosol	58.11	52.12

Protein Annotations

EntrezGene:100786834	MapMan:16.4.3.4	Gene3D:2.30.30.100	UniProt:A0A0R4J2Y1	EMBL:ACUP02002102	EnsemblPlantsGene:GLYMA_03G213600
GO:GO:0000398	GO:GO:0000956	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0030529
EnsemblPlants:KRH68174	ProteinID:KRH68174	ProteinID:KRH68174.1	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:LSm4/Sm_D1/D3
InterPro:Lsm4	PFAM:PF01423	PANTHER:PTHR23338	PANTHER:PTHR23338:SF28	SMART:SM00651	SUPFAM:SSF50182
UniParc:UPI0001890C4F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:41873505..41876257

Molecular Weight (calculated)

16033.2 Da

IEP (calculated)

10.750

GRAVY (calculated)

-0.951

Length

148 amino acids

Sequence
(BLAST)

001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EETKSRADRK PPGVGRGRGR
101: GREEGPGGRP TKGIGRGLDD GGARGAGGSR GRGGPSGKPG GNRGRGRG

Best Arabidopsis Sequence Match ( AT5G27720.1 )
(BLAST)

001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG

Arabidopsis Description

LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.