Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0256900-01 | Rice | nucleus | 84.52 | 89.12 |
| TraesCS3D01G181600.1 | Wheat | cytosol | 81.94 | 88.81 |
| TraesCS3B01G205600.2 | Wheat | cytosol | 81.94 | 88.81 |
| TraesCS3A01G175900.1 | Wheat | cytosol | 81.94 | 88.81 |
| AT5G27720.1 | Thale cress | cytosol | 73.55 | 88.37 |
| VIT_14s0060g02240.t01 | Wine grape | cytosol, extracellular, nucleus | 84.52 | 87.92 |
| KRH68174 | Soybean | nucleus | 83.23 | 87.16 |
| EES02709 | Sorghum | nucleus | 81.29 | 86.9 |
| Bra009946.1-P | Field mustard | cytosol | 72.26 | 86.82 |
| Bra036615.1-P | Field mustard | cytosol | 72.26 | 86.82 |
| CDY19734 | Canola | cytosol, mitochondrion | 72.26 | 84.21 |
| Solyc01g099740.2.1 | Tomato | cytosol | 80.65 | 82.78 |
| CDX86143 | Canola | extracellular | 72.9 | 81.88 |
| CDX80625 | Canola | extracellular | 72.9 | 81.88 |
| GSMUA_Achr2P06970_001 | Banana | extracellular | 86.45 | 78.82 |
| Solyc09g065940.2.1 | Tomato | nucleus | 68.39 | 77.94 |
| CDX99972 | Canola | cytosol | 70.32 | 77.86 |
| Zm00001d040294_P002 | Maize | cytosol, mitochondrion | 82.58 | 71.91 |
| VIT_07s0005g00230.t01 | Wine grape | golgi | 86.45 | 68.37 |
| PGSC0003DMT400019498 | Potato | cytosol | 34.84 | 55.67 |
Protein Annotations
| MapMan:16.4.3.4 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0000956 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0030529 | EnsemblPlantsGene:GSMUA_Achr1G13020_001 | EnsemblPlants:GSMUA_Achr1P13020_001 | EnsemblPlants:GSMUA_Achr1T13020_001 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | InterPro:LSm4/Sm_D1/D3 | InterPro:Lsm4 | UniProt:M0RZG0 | PFAM:PF01423 | PANTHER:PTHR23338 |
| PANTHER:PTHR23338:SF28 | SMART:SM00651 | SUPFAM:SSF50182 | SignalP:SignalP-noTM | UniParc:UPI000295FA3E | SEG:seg |
Description
Probable U6 snRNA-associated Sm-like protein LSm4 [Source:GMGC_GENE;Acc:GSMUA_Achr1G13020_001]
Coordinates
chr1:+:9962820..9971897
Molecular Weight (calculated)
16745.0 Da
IEP (calculated)
10.635
GRAVY (calculated)
-0.899
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MKELTNLVLP LSLLKTAQGH PMLVELKNGE TYNGHLVNCD TWMNIHLREV ICTSKDGDRF WRMPECYIRG NTIKYLRVPD EVIDKVQEET SKSRTDRKPP
101: GVGRGRGRGR DDTSGRPAKG IGRGQDDGSS KGGGRGRGGA GGKGGGVRGG GRGRG
101: GVGRGRGRGR DDTSGRPAKG IGRGQDDGSS KGGGRGRGGA GGKGGGVRGG GRGRG
001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
Arabidopsis Description
LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.