Factsheet for Solyc01g099740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065940.2.1	Tomato	nucleus	80.79	89.71
Bra009946.1-P	Field mustard	cytosol	74.17	86.82
Bra036615.1-P	Field mustard	cytosol	74.17	86.82
KRH31884	Soybean	nucleus	85.43	86.58
AT5G27720.1	Thale cress	cytosol	73.51	86.05
KRH71562	Soybean	nucleus	84.77	85.91
VIT_14s0060g02240.t01	Wine grape	cytosol, extracellular, nucleus	84.11	85.23
CDY19734	Canola	cytosol, mitochondrion	74.17	84.21
EES02709	Sorghum	nucleus	80.13	83.45
TraesCS3D01G181600.1	Wheat	cytosol	78.81	83.22
TraesCS3A01G175900.1	Wheat	cytosol	78.81	83.22
TraesCS3B01G205600.2	Wheat	cytosol	78.81	83.22
Os01t0256900-01	Rice	nucleus	80.79	82.99
GSMUA_Achr1P13020_001	Banana	extracellular	82.78	80.65
CDX86143	Canola	extracellular	73.51	80.43
CDX80625	Canola	extracellular	72.85	79.71
CDX99972	Canola	cytosol	72.85	78.57
GSMUA_Achr2P06970_001	Banana	extracellular	78.15	69.41
Zm00001d040294_P002	Maize	cytosol, mitochondrion	81.46	69.1
VIT_07s0005g00230.t01	Wine grape	golgi	84.77	65.31
PGSC0003DMT400019498	Potato	cytosol	35.1	54.64

Protein Annotations

MapMan:16.4.3.4	Gene3D:2.30.30.100	GO:GO:0000245	GO:GO:0000387	GO:GO:0000398	GO:GO:0000932
GO:GO:0000956	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005688	GO:GO:0005737	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0017070	GO:GO:0030529	GO:GO:0033962	GO:GO:0097526	UniProt:K4B108	InterPro:LSM_dom_euk/arc
InterPro:LSM_dom_sf	InterPro:LSm4/Sm_D1/D3	InterPro:Lsm4	PFAM:PF01423	PANTHER:PTHR23338	PANTHER:PTHR23338:SF28
SMART:SM00651	SUPFAM:SSF50182	EnsemblPlantsGene:Solyc01g099740.2	EnsemblPlants:Solyc01g099740.2.1	UniParc:UPI0002768F68	SEG:seg

Description

No Description!

Coordinates

chr1:+:89887061..89900225

Molecular Weight (calculated)

16177.5 Da

IEP (calculated)

10.547

GRAVY (calculated)

-0.872

Length

151 amino acids

Sequence
(BLAST)

001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EETKSRGDRK PPGVGGRGRG
101: RGGRDEGGAA GRQGKGIGRG MEDAGAKGRG KGGPGAKSGG KGMKCGGRGR G

Best Arabidopsis Sequence Match ( AT5G27720.1 )
(BLAST)

001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG

Arabidopsis Description

LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.