Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400019498 | Potato | cytosol | 47.37 | 37.11 |
| CDY19734 | Canola | cytosol, mitochondrion | 51.32 | 29.32 |
| CDX80625 | Canola | extracellular | 51.32 | 28.26 |
| CDX86143 | Canola | extracellular | 51.32 | 28.26 |
| CDX99972 | Canola | cytosol | 51.32 | 27.86 |
| KRG96430 | Soybean | cytosol | 48.68 | 22.42 |
Protein Annotations
| Gene3D:2.30.30.100 | MapMan:35.1 | GO:A0A078GW99 | UniProt:A0A078GW99 | EnsemblPlants:CDY29444 | ProteinID:CDY29444 |
| ProteinID:CDY29444.1 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00043057001 | InterPro:LSM_dom_sf | InterPro:LSm4/Sm_D1/D3 |
| PANTHER:PTHR23338 | PANTHER:PTHR23338:SF28 | SUPFAM:SSF50182 | TMHMM:TMhelix | UniParc:UPI0004EDEA47 | SEG:seg |
Description
BnaC05g32260DBnaC05g32260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GW99]
Coordinates
chrLK032237:-:56823..57135
Molecular Weight (calculated)
9237.5 Da
IEP (calculated)
8.360
GRAVY (calculated)
0.386
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MNIHLREVFC TSKICWLDAC CRNGDRFWRM PECYIHGNTI KYLRVPDEVI YYFVYIIVYM KFVCIGTSFS IKVYIF
001: MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
101: VDDGGARGRG RGTSMGKMGG NRGAGRGRG
Arabidopsis Description
LSM4LSM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.