Factsheet for Solyc09g009640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g099740.2.1	cytosol, nucleus
Solyc09g065940.2.1	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03870.2	Solyc01g099740.2.1	AT5G27720.1	23221597
AT2G03870.2	Solyc09g065940.2.1	AT5G27720.1	23221597
AT2G03870.2	Solyc01g099740.2.1	AT5G27720.1	23221597
AT2G03870.2	Solyc09g065940.2.1	AT5G27720.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006953	Potato	mitochondrion	100.0	100.0
KRH27506	Soybean	cytosol	90.91	92.78
KRH58808	Soybean	cytosol, extracellular, nucleus	90.91	90.91
KRH42700	Soybean	cytosol, extracellular, nucleus	90.91	90.91
AT2G03870.2	Thale cress	cytosol	85.86	85.86
VIT_13s0064g01230.t01	Wine grape	cytosol	89.9	83.18
EES12932	Sorghum	cytosol	80.81	81.63
GSMUA_Achr10P...	Banana	cytosol	87.88	81.31
Zm00001d002155_P001	Maize	cytosol	79.8	80.61
TraesCS2A01G528800.1	Wheat	cytosol, nucleus, plastid	79.8	79.0
TraesCS2B01G559200.1	Wheat	cytosol, nucleus, plastid	79.8	79.0
TraesCS2D01G531700.1	Wheat	cytosol, nucleus, plastid	79.8	79.0
Os08t0177700-01	Rice	plasma membrane	82.83	75.93
TraesCS7A01G368900.1	Wheat	cytosol	77.78	74.04
CDY45725	Canola	cytosol	86.87	71.67
GSMUA_Achr7P02070_001	Banana	extracellular	38.38	66.67
TraesCS7B01G259600.1	Wheat	cytosol	69.7	66.35
TraesCS1D01G062600.1	Wheat	cytosol, nucleus, plastid	51.52	52.58
TraesCSU01G104500.2	Wheat	plastid	77.78	52.38
CDY49697	Canola	mitochondrion	85.86	52.15
Zm00001d026392_P002	Maize	mitochondrion	75.76	51.02
Solyc05g055260.2.1	Tomato	nucleus	30.3	37.5
Solyc11g006820.1.1	Tomato	cytosol, nucleus	28.28	34.57
Bra025138.1-P	Field mustard	golgi	82.83	33.2
CDX83524	Canola	golgi	82.83	32.03
CDY48065	Canola	golgi	82.83	24.48

Protein Annotations

MapMan:16.4.3.7	Gene3D:2.30.30.100	GO:GO:0000398	GO:GO:0000956	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005688	GO:GO:0005689	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0030529	GO:GO:0071004	GO:GO:0071013	GO:GO:0097526
GO:GO:1990726	UniProt:K4CQZ3	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm7	PFAM:PF01423
PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF5	SMART:SM00651	SUPFAM:SSF50182	EnsemblPlantsGene:Solyc09g009640.2
EnsemblPlants:Solyc09g009640.2.1	UniParc:UPI000276C6DF	:	:	:	:

Description

Sm-like protein LSM7 [Source:Projected from Arabidopsis thaliana (AT2G03870) UniProtKB/Swiss-Prot;Acc:Q9SI54]

Coordinates

chr9:+:3051163..3053017

Molecular Weight (calculated)

10650.8 Da

IEP (calculated)

4.784

GRAVY (calculated)

-0.184

Length

99 amino acids

Sequence
(BLAST)

1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVV GTLKGYDQLL NLVLDEAVEH LRDADDPLKT TDQKRSLGLI VCRGTAVMLV APTDGTDEIS NPFVQPDGA

Best Arabidopsis Sequence Match ( AT2G03870.1 )
(BLAST)

1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV

Arabidopsis Description

LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.