Factsheet for Zm00001d026392_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d040294_P002	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03870.2	Zm00001d040294_P002	AT5G27720.1	23221597
AT2G03870.2	Zm00001d040294_P002	AT5G27720.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12932	Sorghum	cytosol	58.5	87.76
Zm00001d002155_P001	Maize	cytosol	57.82	86.73
TraesCS2D01G531700.1	Wheat	cytosol, nucleus, plastid	57.82	85.0
TraesCS2B01G559200.1	Wheat	cytosol, nucleus, plastid	57.82	85.0
TraesCS2A01G528800.1	Wheat	cytosol, nucleus, plastid	57.82	85.0
KRH58808	Soybean	cytosol, extracellular, nucleus	53.06	78.79
KRH42700	Soybean	cytosol, extracellular, nucleus	53.06	78.79
KRH27506	Soybean	cytosol	51.7	78.35
AT2G03870.2	Thale cress	cytosol	51.7	76.77
PGSC0003DMT400006953	Potato	mitochondrion	51.02	75.76
Solyc09g009640.2.1	Tomato	extracellular, nucleus	51.02	75.76
VIT_13s0064g01230.t01	Wine grape	cytosol	53.06	72.9
GSMUA_Achr10P...	Banana	cytosol	50.34	69.16
CDY45725	Canola	cytosol	51.7	63.33
GSMUA_Achr7P02070_001	Banana	extracellular	19.73	50.88
CDY49697	Canola	mitochondrion	53.74	48.47
Zm00001d047271_P002	Maize	cytosol	19.05	35.0
Zm00001d029483_P001	Maize	cytosol	18.37	33.75
Bra025138.1-P	Field mustard	golgi	48.98	29.15
CDX83524	Canola	golgi	48.98	28.12
CDY48065	Canola	golgi	51.02	22.39
Zm00001d037942_P001	Maize	cytosol, nucleus, plastid	17.01	21.74
Zm00001d052555_P001	Maize	cytosol	17.01	21.74
Zm00001d028673_P001	Maize	extracellular	14.97	12.57

Protein Annotations

MapMan:16.4.3.7	Gene3D:2.30.30.100	UniProt:A0A1D6JFB0	ProteinID:AQK46466.1	GO:GO:0000398	GO:GO:0000956
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0030529	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm7
PFAM:PF01423	PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF5	SMART:SM00651	SUPFAM:SSF50182
UniParc:UPI0008425865	EnsemblPlantsGene:Zm00001d026392	EnsemblPlants:Zm00001d026392_P002	EnsemblPlants:Zm00001d026392_T002	SEG:seg	:

Description

LSM7-like%3B LSM7-like protein

Coordinates

chr10:-:144995255..145002117

Molecular Weight (calculated)

15907.3 Da

IEP (calculated)

10.061

GRAVY (calculated)

-0.137

Length

147 amino acids

Sequence
(BLAST)

001: MYGQGPALFL GEFFPLPPLR PCRAAAAAST VRAKIRSSLS AIFGRRRQQD LREGFRVEMA GRKETALDLA KFVDKGVQVK LTGGRQVTGT LKGYDQLLNL
101: VLDEAVENER GKTRQLGLIV CRGTAVMLVS PTDGTDEIAN PFLADGA

Best Arabidopsis Sequence Match ( AT2G03870.1 )
(BLAST)

1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV

Arabidopsis Description

LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.