Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G03870.2 | Thale cress | cytosol | 79.17 | 95.96 |
| KRH58808 | Soybean | cytosol, extracellular, nucleus | 74.17 | 89.9 |
| KRH42700 | Soybean | cytosol, extracellular, nucleus | 74.17 | 89.9 |
| KRH27506 | Soybean | cytosol | 70.83 | 87.63 |
| Solyc09g009640.2.1 | Tomato | extracellular, nucleus | 71.67 | 86.87 |
| PGSC0003DMT400006953 | Potato | mitochondrion | 71.67 | 86.87 |
| VIT_13s0064g01230.t01 | Wine grape | cytosol | 73.33 | 82.24 |
| Zm00001d002155_P001 | Maize | cytosol | 66.67 | 81.63 |
| EES12932 | Sorghum | cytosol | 66.67 | 81.63 |
| TraesCS2B01G559200.1 | Wheat | cytosol, nucleus, plastid | 67.5 | 81.0 |
| TraesCS2A01G528800.1 | Wheat | cytosol, nucleus, plastid | 67.5 | 81.0 |
| TraesCS2D01G531700.1 | Wheat | cytosol, nucleus, plastid | 67.5 | 81.0 |
| GSMUA_Achr10P... | Banana | cytosol | 71.67 | 80.37 |
| Os08t0177700-01 | Rice | plasma membrane | 69.17 | 76.85 |
| TraesCS7A01G368900.1 | Wheat | cytosol | 65.0 | 75.0 |
| GSMUA_Achr7P02070_001 | Banana | extracellular | 33.33 | 70.18 |
| TraesCS7B01G259600.1 | Wheat | cytosol | 57.5 | 66.35 |
| CDY49697 | Canola | mitochondrion | 89.17 | 65.64 |
| TraesCSU01G104500.2 | Wheat | plastid | 66.67 | 54.42 |
| TraesCS1D01G062600.1 | Wheat | cytosol, nucleus, plastid | 43.33 | 53.61 |
| Zm00001d026392_P002 | Maize | mitochondrion | 63.33 | 51.7 |
| CDX83524 | Canola | golgi | 79.17 | 37.11 |
| CDY23693 | Canola | cytosol | 23.33 | 35.44 |
| CDY08518 | Canola | cytosol | 23.33 | 35.44 |
| CDY01024 | Canola | cytosol | 23.33 | 35.44 |
| CDY65184 | Canola | cytosol | 23.33 | 35.0 |
| CDY39683 | Canola | cytosol | 23.33 | 35.0 |
| CDY48065 | Canola | golgi | 78.33 | 28.06 |
Protein Annotations
| MapMan:16.4.3.7 | Gene3D:2.30.30.100 | GO:A0A078I4F1 | UniProt:A0A078I4F1 | EnsemblPlants:CDY45725 | ProteinID:CDY45725 |
| ProteinID:CDY45725.1 | GO:GO:0000398 | GO:GO:0000956 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0030529 |
| EnsemblPlantsGene:GSBRNA2T00082538001 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm7 | PFAM:PF01423 | PIRSF:PIRSF037188 |
| PANTHER:PTHR10553 | PANTHER:PTHR10553:SF5 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI0004EE6166 | : |
Description
BnaC02g35270DBnaC02g35270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4F1]
Coordinates
chrLK032634:+:155927..157497
Molecular Weight (calculated)
13139.8 Da
IEP (calculated)
5.888
GRAVY (calculated)
-0.152
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRDLNRRFF FGESLSGLCS NMSGRKETVL DLAKFVDKGV QVKLTGGRQV TGTLKGYDQL LNLVLDAAVE SVRDHDDPLK TTDQTRRLGL IVCRGTAVML
101: VSPTDGTEEI ANPFVQPEAV
101: VSPTDGTEEI ANPFVQPEAV
1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV
Arabidopsis Description
LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.