Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 7
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025138.1-P | Field mustard | golgi | 90.23 | 93.52 |
| AT2G03870.2 | Thale cress | cytosol | 35.55 | 91.92 |
| KRH42700 | Soybean | cytosol, extracellular, nucleus | 33.59 | 86.87 |
| KRH58808 | Soybean | cytosol, extracellular, nucleus | 33.59 | 86.87 |
| KRH27506 | Soybean | cytosol | 32.03 | 84.54 |
| Solyc09g009640.2.1 | Tomato | extracellular, nucleus | 32.03 | 82.83 |
| PGSC0003DMT400006953 | Potato | mitochondrion | 32.03 | 82.83 |
| VIT_13s0064g01230.t01 | Wine grape | cytosol | 34.38 | 82.24 |
| Zm00001d002155_P001 | Maize | cytosol | 30.47 | 79.59 |
| EES12932 | Sorghum | cytosol | 30.47 | 79.59 |
| CDY45725 | Canola | cytosol | 37.11 | 79.17 |
| TraesCS2D01G531700.1 | Wheat | cytosol, nucleus, plastid | 30.86 | 79.0 |
| TraesCS2B01G559200.1 | Wheat | cytosol, nucleus, plastid | 30.86 | 79.0 |
| TraesCS2A01G528800.1 | Wheat | cytosol, nucleus, plastid | 30.86 | 79.0 |
| GSMUA_Achr10P... | Banana | cytosol | 32.81 | 78.5 |
| CDY48065 | Canola | golgi | 98.05 | 74.93 |
| TraesCS7A01G368900.1 | Wheat | cytosol | 29.69 | 73.08 |
| Os08t0177700-01 | Rice | plasma membrane | 30.47 | 72.22 |
| GSMUA_Achr7P02070_001 | Banana | extracellular | 15.62 | 70.18 |
| TraesCS7B01G259600.1 | Wheat | cytosol | 26.17 | 64.42 |
| CDY49697 | Canola | mitochondrion | 36.72 | 57.67 |
| TraesCSU01G104500.2 | Wheat | plastid | 30.08 | 52.38 |
| TraesCS1D01G062600.1 | Wheat | cytosol, nucleus, plastid | 19.53 | 51.55 |
| Zm00001d026392_P002 | Maize | mitochondrion | 28.12 | 48.98 |
| CDY01024 | Canola | cytosol | 10.55 | 34.18 |
| CDY08518 | Canola | cytosol | 10.55 | 34.18 |
| CDY23693 | Canola | cytosol | 10.55 | 34.18 |
| CDY65184 | Canola | cytosol | 10.55 | 33.75 |
| CDY39683 | Canola | cytosol | 10.55 | 33.75 |
Protein Annotations
| MapMan:16.4.3.7 | Gene3D:2.30.30.100 | EnsemblPlants:CDX83524 | ProteinID:CDX83524 | ProteinID:CDX83524.1 | GO:GO:0000398 |
| GO:GO:0000956 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00139126001 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm7 | PFAM:PF01423 | PANTHER:PTHR10553 |
| PANTHER:PTHR10553:SF5 | SMART:SM00651 | SUPFAM:SSF50182 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE2FA5 |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g22640D
Coordinates
chrLK031833:+:51688..55359
Molecular Weight (calculated)
28290.4 Da
IEP (calculated)
7.987
GRAVY (calculated)
-0.156
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLIRVTFLF CALAFLLLIT PTCSLQLHPR FSSPSQGVSE KIVIGMAPLR KLMIISSEHE NVMKSGAQES SSEQPRVTSS SGKSKNEEKR LGEEEEEKAL
101: SKYLSMDYPR IKQNPKSLVW GLSLPALRFT HCNMMAGLVF SSEIFVSPVT SVEHTLLYHG RKETVLDLAK FVDKGVQVKL TGGRQVTGTL KGYDQLLNLV
201: LDGALESVRD HDDPLKTTDQ TRRLGLIVCR GTAVMLVSPT DGTEEIANPF NQPEAV
101: SKYLSMDYPR IKQNPKSLVW GLSLPALRFT HCNMMAGLVF SSEIFVSPVT SVEHTLLYHG RKETVLDLAK FVDKGVQVKL TGGRQVTGTL KGYDQLLNLV
201: LDGALESVRD HDDPLKTTDQ TRRLGLIVCR GTAVMLVSPT DGTEEIANPF NQPEAV
1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV
Arabidopsis Description
LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.