Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- plastid 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G175900.1 | cytosol, nucleus |
| TraesCS3B01G205600.2 | cytosol, nucleus |
| TraesCS3D01G181600.1 | cytosol, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G368900.1 | Wheat | cytosol | 69.39 | 98.08 |
| TraesCS7B01G259600.1 | Wheat | cytosol | 63.27 | 89.42 |
| Os08t0177700-01 | Rice | plasma membrane | 61.22 | 83.33 |
| AT2G03870.2 | Thale cress | cytosol | 55.1 | 81.82 |
| KRH58808 | Soybean | cytosol, extracellular, nucleus | 55.1 | 81.82 |
| KRH42700 | Soybean | cytosol, extracellular, nucleus | 55.1 | 81.82 |
| KRH27506 | Soybean | cytosol | 53.06 | 80.41 |
| Solyc09g009640.2.1 | Tomato | extracellular, nucleus | 52.38 | 77.78 |
| PGSC0003DMT400006953 | Potato | mitochondrion | 52.38 | 77.78 |
| VIT_13s0064g01230.t01 | Wine grape | cytosol | 55.78 | 76.64 |
| GSMUA_Achr10P... | Banana | cytosol | 53.06 | 72.9 |
| CDY45725 | Canola | cytosol | 54.42 | 66.67 |
| GSMUA_Achr7P02070_001 | Banana | extracellular | 23.81 | 61.4 |
| TraesCS1D01G062600.1 | Wheat | cytosol, nucleus, plastid | 35.37 | 53.61 |
| CDY49697 | Canola | mitochondrion | 53.74 | 48.47 |
| Bra025138.1-P | Field mustard | golgi | 52.38 | 31.17 |
| CDX83524 | Canola | golgi | 52.38 | 30.08 |
| CDY48065 | Canola | golgi | 53.06 | 23.28 |
Protein Annotations
| EnsemblPlants:TraesCSU01G104500.2 | EnsemblPlantsGene:TraesCSU01G104500 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0000956 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf |
| InterPro:Lsm7 | PANTHER:PTHR10553 | PANTHER:PTHR10553:SF5 | PFAM:PF01423 | PIRSF:PIRSF037188 | SMART:SM00651 |
| SUPFAM:SSF50182 | TIGR:cd01729 | MapMan:16.4.3.7 | : | : | : |
Description
No Description!
Coordinates
chrUn:-:92134659..92136329
Molecular Weight (calculated)
15823.0 Da
IEP (calculated)
5.691
GRAVY (calculated)
-0.196
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSKLGSIDQ SHFSPVPSPA PGGRLEFRSH VIGVGCLCLG CAVQSGRKET VLDLAKFVDK GVQVKLTGGR QVTGTLKGYD QLLNLVLDEA IEFEREQDDP
101: LKLSTKTRQL GLIVCRGTAV MLVSPTEGTE EIKNPFQEAD GEQTAHS
101: LKLSTKTRQL GLIVCRGTAV MLVSPTEGTE EIKNPFQEAD GEQTAHS
1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS
Arabidopsis Description
SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.