Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 4
- cytosol 2
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P13020_001 | cytosol, nucleus |
| GSMUA_Achr2P06970_001 | cytosol, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58808 | Soybean | cytosol, extracellular, nucleus | 73.68 | 42.42 |
| KRH42700 | Soybean | cytosol, extracellular, nucleus | 73.68 | 42.42 |
| AT2G03870.2 | Thale cress | cytosol | 71.93 | 41.41 |
| KRH27506 | Soybean | cytosol | 70.18 | 41.24 |
| GSMUA_Achr10P... | Banana | cytosol | 77.19 | 41.12 |
| VIT_13s0064g01230.t01 | Wine grape | cytosol | 73.68 | 39.25 |
| Solyc09g009640.2.1 | Tomato | extracellular, nucleus | 66.67 | 38.38 |
| PGSC0003DMT400006953 | Potato | mitochondrion | 66.67 | 38.38 |
| Zm00001d002155_P001 | Maize | cytosol | 59.65 | 34.69 |
| EES12932 | Sorghum | cytosol | 59.65 | 34.69 |
| TraesCS2D01G531700.1 | Wheat | cytosol, nucleus, plastid | 59.65 | 34.0 |
| TraesCS2B01G559200.1 | Wheat | cytosol, nucleus, plastid | 59.65 | 34.0 |
| TraesCS2A01G528800.1 | Wheat | cytosol, nucleus, plastid | 59.65 | 34.0 |
| TraesCS7A01G368900.1 | Wheat | cytosol | 61.4 | 33.65 |
| TraesCS7B01G259600.1 | Wheat | cytosol | 61.4 | 33.65 |
| CDY45725 | Canola | cytosol | 70.18 | 33.33 |
| Os08t0177700-01 | Rice | plasma membrane | 61.4 | 32.41 |
| CDY49697 | Canola | mitochondrion | 68.42 | 23.93 |
| TraesCSU01G104500.2 | Wheat | plastid | 61.4 | 23.81 |
| TraesCS1D01G062600.1 | Wheat | cytosol, nucleus, plastid | 35.09 | 20.62 |
| Zm00001d026392_P002 | Maize | mitochondrion | 50.88 | 19.73 |
| Bra025138.1-P | Field mustard | golgi | 70.18 | 16.19 |
| CDX83524 | Canola | golgi | 70.18 | 15.62 |
| GSMUA_AchrUn_... | Banana | cytosol | 21.05 | 15.19 |
| GSMUA_Achr5P23160_001 | Banana | cytosol | 21.05 | 15.19 |
| GSMUA_Achr3P20170_001 | Banana | cytosol | 21.05 | 15.19 |
| CDY48065 | Canola | golgi | 70.18 | 11.94 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P02070_001 | EnsemblPlants:GSMUA_Achr7T02070_001 | EnsemblPlantsGene:GSMUA_Achr7G02070_001 | Gene3D:2.30.30.100 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf |
| PANTHER:PTHR10553 | PANTHER:PTHR10553:SF5 | PFAM:PF01423 | SUPFAM:SSF50182 | UniParc:UPI0002952168 | UniProt:M0TDZ7 |
| MapMan:35.1 | : | : | : | : | : |
Description
Probable U6 snRNA-associated Sm-like protein LSm7 [Source:GMGC_GENE;Acc:GSMUA_Achr7G02070_001]
Coordinates
chr7:+:1588405..1592210
Molecular Weight (calculated)
6618.1 Da
IEP (calculated)
4.855
GRAVY (calculated)
-0.333
Length
57 amino acids
Sequence
(BLAST)
(BLAST)
1: MLFLGYDQLL NLVLDKATEF LRDPDDPLKT TDQTRRLGLI ICRGPAVMLD SPDRWNR
1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV
Arabidopsis Description
LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.