Factsheet for GSMUA_AchrUn_randomP21620_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P23160_001	Banana	cytosol	97.47	97.47
GSMUA_Achr3P20170_001	Banana	cytosol	97.47	97.47
KRH67942	Soybean	cytosol	94.94	94.94
KRG96200	Soybean	nucleus	94.94	94.94
Os07t0608700-02	Rice	cytosol	94.94	93.75
EER99690	Sorghum	cytosol	94.94	93.75
Zm00001d029483_P001	Maize	cytosol	93.67	92.5
EER94701	Sorghum	cytosol	93.67	91.36
VIT_08s0007g03130.t01	Wine grape	cytosol	92.41	91.25
Zm00001d047271_P002	Maize	cytosol	92.41	91.25
KRH28926	Soybean	nucleus	91.14	91.14
Solyc05g055260.2.1	Tomato	nucleus	91.14	90.0
PGSC0003DMT400060122	Potato	cytosol	91.14	90.0
Os03t0410900-01	Rice	nucleus	91.14	90.0
CDY23693	Canola	cytosol	88.61	88.61
CDY08518	Canola	cytosol	88.61	88.61
CDY01024	Canola	cytosol	88.61	88.61
Bra034834.1-P	Field mustard	cytosol	88.61	88.61
Bra034726.1-P	Field mustard	cytosol	88.61	88.61
Bra002044.1-P	Field mustard	cytosol	88.61	88.61
AT3G11500.2	Thale cress	cytosol	88.61	88.61
Solyc11g006820.1.1	Tomato	cytosol, nucleus	89.87	87.65
CDY39683	Canola	cytosol	88.61	87.5
Bra032135.1-P	Field mustard	cytosol	88.61	87.5
AT2G23930.1	Thale cress	cytosol	88.61	87.5
CDY65184	Canola	cytosol	88.61	87.5
PGSC0003DMT400061605	Potato	cytosol	88.61	86.42
TraesCS2A01G171800.1	Wheat	cytosol	84.81	84.81
TraesCS2B01G198200.1	Wheat	cytosol	84.81	82.72
HORVU2Hr1G031890.2	Barley	cytosol	91.14	81.82
Zm00001d037942_P001	Maize	cytosol, nucleus, plastid	54.43	37.39
Zm00001d052555_P001	Maize	cytosol	54.43	37.39
GSMUA_Achr10P...	Banana	cytosol	32.91	24.3
Zm00001d028673_P001	Maize	extracellular	53.16	24.0
GSMUA_Achr7P02070_001	Banana	extracellular	15.19	21.05

Protein Annotations

MapMan:16.4.2.7	Gene3D:2.30.30.100	GO:GO:0000387	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0030529	EnsemblPlantsGene:GSMUA_AchrUn_randomG21620_001	EnsemblPlants:GSMUA_AchrUn_randomP21620_001	EnsemblPlants:GSMUA_AchrUn_randomT21620_001	InterPro:LSM_dom_euk/arc
InterPro:LSM_dom_sf	UniProt:M0UB70	PFAM:PF01423	PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF15
SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_G	UniParc:UPI0002948F46	:	:

Description

Probable small nuclear ribonucleoprotein G [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG21620_001]

Coordinates

chrchrUn_random:-:105807717..105818101

Molecular Weight (calculated)

8803.8 Da

IEP (calculated)

9.889

GRAVY (calculated)

-0.218

Length

79 amino acids

Sequence
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRVVVG TLRGFDQFMN LVVDNTVEVN GNEKNDIGMV VIRGNSVVMI EALEPVART

Best Arabidopsis Sequence Match ( AT2G23930.1 )
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS

Arabidopsis Description

SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.